PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PSME_00050866-RA
Organism
Pseudotsuga menziesii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Pseudotsuga
Family MYB
Protein Properties Length: 366aa    MW: 41524 Da    PI: 6.9547
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PSME_00050866-RAgenomePRSView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding34.74.1e-113785148
                      TSSS-HHHHHHHHHHHHHTTTT.-HHHHHHHHTTTS-HHHHHHHHHHHT CS
   Myb_DNA-binding  1 rgrWTteEdellvdavkqlGgg.tWktIartmgkgRtlkqcksrwqkyl 48
                      rg+WT+ Ed +l  +++ +G++  W+  +++ g++R + +c++rw  yl
  PSME_00050866-RA 37 RGAWTAKEDMILSAYIQIHGNHgGWRNLSKRAGLNRRGTSCRLRWVHYL 85
                      89*******************************************9886 PP
2Myb_DNA-binding45.12.2e-1496136648
                       HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
   Myb_DNA-binding   6 teEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 
                       + E+el+++++++lG++ W++Ia +++ gRt++++k++w ++l
  PSME_00050866-RA  96 PAEEELIIRLHRLLGNR-WSLIAGRVP-GRTGNEIKNYWKTHL 136
                       67***************.*********.***********9986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.603.0E-172887IPR009057Homeodomain-like
PROSITE profilePS5009010.3483285IPR017877Myb-like domain
SuperFamilySSF466894.3E-2435132IPR009057Homeodomain-like
SMARTSM007174.7E-93687IPR001005SANT/Myb domain
PfamPF002491.2E-93785IPR001005SANT/Myb domain
CDDcd001673.95E-53985No hitNo description
PROSITE profilePS5129423.90786140IPR017930Myb domain
Gene3DG3DSA:1.10.10.601.4E-2188139IPR009057Homeodomain-like
SMARTSM007175.2E-1390138IPR001005SANT/Myb domain
CDDcd001671.05E-1096136No hitNo description
PfamPF002494.6E-1396136IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 366 aa     Download sequence    Send to blast
PPATEKSALE LDFRVYREEY PNMTGRSPCC SKEGLNRGAW TAKEDMILSA YIQIHGNHGG  60
WRNLSKRAGL NRRGTSCRLR WVHYLRPEIK RGNIFPAEEE LIIRLHRLLG NRWSLIAGRV  120
PGRTGNEIKN YWKTHLKNKK LMSMDKCQVK MLNLKARAES RPPLQNGVIK TTPVKITTAV  180
RHYEMITPNR CSNIGGSDQA FKMCNIEETY TNSSKSCCYI FVKDSIPEND SGLMAFRMAN  240
ANLVETEVDQ QSVHSPDHFA KNAGTIEEIL CDSNNLSSDP DCNQCVFSTG FGLDCNQCVF  300
STGFGLEDLY STGLATLDEE TNEVEFQSKI LEQVNSITVP NDQRMKEFYD STEPVDWYHV  360
LTDTLN
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A2e-17351395107B-MYB
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
TrEMBLA0A167V9011e-100A0A167V901_PICAB; Transcription factor MYB30
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G22640.15e-43myb domain protein 3