PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | PSME_00050855-RA | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Pseudotsuga
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Family | MYB | ||||||||
Protein Properties | Length: 321aa MW: 36668.6 Da PI: 8.8653 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 50.8 | 3.8e-16 | 29 | 76 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 rg WTt Ed +l+++++ +G g+W++ ++ g++R++k+c++rw++yl PSME_00050855-RA 29 RGTWTTKEDMILLEYIRTHGEGRWTKLSQNAGLKRCGKSCRLRWLNYL 76 89********************************************97 PP | |||||||
2 | Myb_DNA-binding | 50.1 | 6.4e-16 | 82 | 127 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 rg T++Ed+l+++ +++lG++ W++Ia +++ +Rt++++k++w+++l PSME_00050855-RA 82 RGDITPDEDDLIIRMHNLLGNR-WSLIAGRLP-NRTDNEIKNYWNSHL 127 6778******************.*********.************986 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51294 | 15.338 | 24 | 76 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 2.81E-29 | 27 | 123 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 2.3E-14 | 28 | 78 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 2.6E-15 | 29 | 76 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 1.1E-22 | 30 | 83 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 1.03E-10 | 31 | 76 | No hit | No description |
PROSITE profile | PS51294 | 25.251 | 77 | 131 | IPR017930 | Myb domain |
SMART | SM00717 | 7.7E-16 | 81 | 129 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 1.2E-14 | 82 | 127 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 5.6E-25 | 84 | 131 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 1.49E-11 | 86 | 127 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 321 aa Download sequence Send to blast |
HHQLWSYRVR ISTNMGRIPC CSTKGGLNRG TWTTKEDMIL LEYIRTHGEG RWTKLSQNAG 60 LKRCGKSCRL RWLNYLRPDI KRGDITPDED DLIIRMHNLL GNRWSLIAGR LPNRTDNEIK 120 NYWNSHLSKR LAMNKSQQDK QILMTRSSFL SPFQNQVFKP SPVKITTAKR HSEKVRPNSC 180 CNGYGGKYHS SDEAPFKLPV AKETANPSKS KWCDLVVEKM ITDDESERIA SLETADVNIV 240 RTKVINSTYP LSSLAEQQFP HPDLFAVSLA QSSMDFDELS SPYSNLLWSP SNYSLPEFGL 300 QEFYTAQAPL TAETNGFEDI C |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1h8a_C | 2e-25 | 27 | 131 | 25 | 128 | MYB TRANSFORMING PROTEIN |
Search in ModeBase |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
TrEMBL | B8LMJ6 | 1e-103 | B8LMJ6_PICSI; Uncharacterized protein |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G22640.1 | 1e-57 | myb domain protein 3 |