PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | PSME_00050760-RA | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Pseudotsuga
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Family | GATA | ||||||||
Protein Properties | Length: 258aa MW: 29549.5 Da PI: 10.0102 | ||||||||
Description | GATA family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | GATA | 48.9 | 8.8e-16 | 189 | 223 | 1 | 35 |
GATA 1 CsnCgttkTplWRrgpdgnktLCnaCGlyyrkkgl 35 C+ C+t T lWR+ pd +k+LCnaCG++++k g+ PSME_00050760-RA 189 CTECKTNRTLLWRNVPDRPKSLCNACGIRFKKIGK 223 ********************************886 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50114 | 10.317 | 183 | 219 | IPR000679 | Zinc finger, GATA-type |
SMART | SM00401 | 3.2E-12 | 183 | 235 | IPR000679 | Zinc finger, GATA-type |
SuperFamily | SSF57716 | 8.08E-12 | 184 | 230 | No hit | No description |
Gene3D | G3DSA:3.30.50.10 | 3.1E-13 | 185 | 225 | IPR013088 | Zinc finger, NHR/GATA-type |
CDD | cd00202 | 2.28E-9 | 188 | 222 | No hit | No description |
PROSITE pattern | PS00344 | 0 | 189 | 214 | IPR000679 | Zinc finger, GATA-type |
Pfam | PF00320 | 1.3E-13 | 189 | 223 | IPR000679 | Zinc finger, GATA-type |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0008270 | Molecular Function | zinc ion binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 258 aa Download sequence Send to blast |
MLRGALCARQ MYDHNHYKKF WLKKMEETED EQTQDSLRTL QPEGFGSRIF WHSSESFRPS 60 LEIKVRIKST IRVSSVRSGA GSKNCERNLA ASEKDLPDGS EIDRALSIGM QMHMPYDADP 120 RNKPQKSVNI FPLQEEGHEE RKLQENGKKS SAKESLQSLK RFLNIGENRL VKTGAMDAEF 180 TDAAVARTCT ECKTNRTLLW RNVPDRPKSL CNACGIRFKK IGKREQQKSG SRLPSVSSVR 240 QMTVKRKQQD NDEYDPLP |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G18380.1 | 2e-13 | GATA transcription factor 20 |