PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PSME_00050753-RA

Organism

Pseudotsuga menziesii

Taxonomic ID

3357

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Pseudotsuga

Family

NAC

Protein Properties

Length: 361aa MW: 41824 Da PI: 7.2961

Description

NAC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PSME_00050753-RA	genome	PRS	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NAM	167.5	4.6e-52	10	138	1	128
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpk..kvka.eekewyfFskrdkkyatgkrknratksgyWkatgkdk 90 +ppGfrFhPtdeel+++yL+kkv+ + ++l +vi++vd++k+ePwdL++ k+ + ++ewyfFs++dkky+tg+r+nrat++g+Wkatg+dk PSME_00050753-RA 10 VPPGFRFHPTDEELLHYYLRKKVSYEMIDL-NVIRDVDLNKLEPWDLHEtcKIGSaPQDEWYFFSHKDKKYPTGTRTNRATAAGFWKATGRDK 101 69**************************.99**********852344332445****************************** PP NAM 91 evlskkgelvglkktLvfykgrapkgektdWvmheyrl 128 ++ + + +g++ktLvfy+grap+g+kt+W+mheyrl PSME_00050753-RA 102 IIFM-NFKRIGMRKTLVFYTGRAPHGQKTEWIMHEYRL 138 9.8999**************************98 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF101941	5.36E-58	4	159	IPR003441	NAC domain
PROSITE profile	PS51005	57.01	10	159	IPR003441	NAC domain
Pfam	PF02365	3.5E-28	11	138	IPR003441	NAC domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 361 aa Download sequence Send to blast
MAAANGQSCV PPGFRFHPTD EELLHYYLRK KVSYEMIDLN VIRDVDLNKL EPWDLHETCK 60 IGSAPQDEWY FFSHKDKKYP TGTRTNRATA AGFWKATGRD KIIFMNFKRI GMRKTLVFYT 120 GRAPHGQKTE WIMHEYRLDD KEKLHTNEDG WVVCRVFKKR MHTKDTKDMN AERERSSPSA 180 NDEERTGHAL PQLMDFPSGQ QLHQFNHQQL DLGKPPPPAP RYGFSHDIFA QMSDIKTPED 240 ATCNPSSTVI KSFIPQSLLH MNISRRPQSI NMLMGYLPDQ EPQTKLSTAN EFREERSNDW 300 TLLDSLMQAS HVDPAETNKQ MRCNDHPQTL DGSSHGLALG VNRYDNNHYS STGIEYWNFE 360 K

Sequence ? help Back to Top

Protein Sequence Length: 361 aa Download sequence Send to blast

MAAANGQSCV PPGFRFHPTD EELLHYYLRK KVSYEMIDLN VIRDVDLNKL EPWDLHETCK  60
IGSAPQDEWY FFSHKDKKYP TGTRTNRATA AGFWKATGRD KIIFMNFKRI GMRKTLVFYT  120
GRAPHGQKTE WIMHEYRLDD KEKLHTNEDG WVVCRVFKKR MHTKDTKDMN AERERSSPSA  180
NDEERTGHAL PQLMDFPSGQ QLHQFNHQQL DLGKPPPPAP RYGFSHDIFA QMSDIKTPED  240
ATCNPSSTVI KSFIPQSLLH MNISRRPQSI NMLMGYLPDQ EPQTKLSTAN EFREERSNDW  300
TLLDSLMQAS HVDPAETNKQ MRCNDHPQTL DGSSHGLALG VNRYDNNHYS STGIEYWNFE  360
K

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1ut4_A	2e-49	7	160	14	166	NO APICAL MERISTEM PROTEIN
1ut4_B	2e-49	7	160	14	166	NO APICAL MERISTEM PROTEIN
1ut7_A	2e-49	7	160	14	166	NO APICAL MERISTEM PROTEIN
1ut7_B	2e-49	7	160	14	166	NO APICAL MERISTEM PROTEIN
3swm_A	2e-49	7	160	17	169	NAC domain-containing protein 19
3swm_B	2e-49	7	160	17	169	NAC domain-containing protein 19
3swm_C	2e-49	7	160	17	169	NAC domain-containing protein 19
3swm_D	2e-49	7	160	17	169	NAC domain-containing protein 19
3swp_A	2e-49	7	160	17	169	NAC domain-containing protein 19
3swp_B	2e-49	7	160	17	169	NAC domain-containing protein 19
3swp_C	2e-49	7	160	17	169	NAC domain-containing protein 19
3swp_D	2e-49	7	160	17	169	NAC domain-containing protein 19
4dul_A	2e-49	7	160	14	166	NAC domain-containing protein 19
4dul_B	2e-49	7	160	14	166	NAC domain-containing protein 19
Search in ModeBase

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	KM496549	0.0	KM496549.1 Pinus massoniana NAC domain protein (NAC) mRNA, partial cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010940850.1	1e-95	NAC domain-containing protein 43
TrEMBL	B8LLZ9	1e-107	B8LLZ9_PICSI; Uncharacterized protein
STRING	EOY14338	1e-94	(Theobroma cacao)
STRING	XP_008383226.1	4e-94	(Malus domestica)
STRING	EMJ14643	2e-94	(Prunus persica)
STRING	XP_010275962.1	7e-95	(Nelumbo nucifera)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G79580.3	1e-81	NAC family protein