PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PSME_00050686-RA
Organism
Pseudotsuga menziesii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Pseudotsuga
Family NAC
Protein Properties Length: 319aa    MW: 35820.3 Da    PI: 9.4728
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PSME_00050686-RAgenomePRSView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM164.73.4e-51281542128
               NAM   2 ppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevls 94 
                       ppG rF Ptdeelvv+yL+kk++++ +++  +i+evd+yk++Pw+Lp k   +ekewyfF++rd+ky++g+r+nra+ sgyWkatg dk++ +
  PSME_00050686-RA  28 PPGSRFFPTDEELVVHYLCKKAASQIIPV-PIIAEVDLYKYDPWQLPDKSLFGEKEWYFFTPRDRKYPNGSRPNRAAGSGYWKATGADKPINA 119
                       8****************************.88***************7777799*************************************** PP

               NAM  95 k.kgelvglkktLvfykgrapkgektdWvmheyrl 128
                       k +++ vg+kk Lvfy g+apkg+kt+W+mheyrl
  PSME_00050686-RA 120 KgGKKRVGIKKALVFYAGKAPKGSKTNWIMHEYRL 154
                       966777***************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019414.18E-6123180IPR003441NAC domain
PROSITE profilePS5100558.99127180IPR003441NAC domain
PfamPF023654.9E-2628154IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 319 aa     Download sequence    Send to blast
MGTSLGDFHE EQPWILKNMD CHEHKQWPPG SRFFPTDEEL VVHYLCKKAA SQIIPVPIIA  60
EVDLYKYDPW QLPDKSLFGE KEWYFFTPRD RKYPNGSRPN RAAGSGYWKA TGADKPINAK  120
GGKKRVGIKK ALVFYAGKAP KGSKTNWIMH EYRLADVSRP ARKKGSLRLD DWVLCRIYNK  180
KISAKKLALE QKEGPMDAPM EAIDEKDMEN QPASTEVEHS GIEQNNPSSD NLRKLGPSPT  240
SHNAVPPGSY PMNANINLQN DSFQNTTSPF NGSTLKAPVQ NIAFNSILSS INHQWTNYNS  300
TDLVSRLHTD SSSSKPSSS
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3swm_A6e-822818621174NAC domain-containing protein 19
3swm_B6e-822818621174NAC domain-containing protein 19
3swm_C6e-822818621174NAC domain-containing protein 19
3swm_D6e-822818621174NAC domain-containing protein 19
3swp_A6e-822818621174NAC domain-containing protein 19
3swp_B6e-822818621174NAC domain-containing protein 19
3swp_C6e-822818621174NAC domain-containing protein 19
3swp_D6e-822818621174NAC domain-containing protein 19
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor involved in stress response. {ECO:0000250|UniProtKB:Q7F2L3}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Induced by salt stress (PubMed:18813954, PubMed:20632034). Induced by dehydration, cold stress and methyl jasmonate (PubMed:20632034). {ECO:0000269|PubMed:18813954, ECO:0000269|PubMed:20632034}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008792531.11e-93NAC domain-containing protein 68-like isoform X2
SwissprotQ52QH42e-89NAC68_ORYSJ; NAC domain-containing protein 68
TrEMBLA0A0D6R3P91e-137A0A0D6R3P9_ARACU; Uncharacterized protein
STRINGGSMUA_Achr4P02390_0011e-94(Musa acuminata)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G01720.13e-91NAC family protein
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]
  2. Taga Y, et al.
    Role of OsHSP90 and IREN, Ca2+ dependent nuclease, in plant hypersensitive cell death induced by transcription factor OsNAC4.
    Plant Signal Behav, 2009. 4(8): p. 740-2
    [PMID:19820348]
  3. Xia N, et al.
    Characterization of a novel wheat NAC transcription factor gene involved in defense response against stripe rust pathogen infection and abiotic stresses.
    Mol. Biol. Rep., 2010. 37(8): p. 3703-12
    [PMID:20213512]
  4. Takasaki H, et al.
    The abiotic stress-responsive NAC-type transcription factor OsNAC5 regulates stress-inducible genes and stress tolerance in rice.
    Mol. Genet. Genomics, 2010. 284(3): p. 173-83
    [PMID:20632034]
  5. Nakayama A, et al.
    Genome-wide identification of WRKY45-regulated genes that mediate benzothiadiazole-induced defense responses in rice.
    BMC Plant Biol., 2013. 13: p. 150
    [PMID:24093634]
  6. Ootsubo Y,Hibino T,Wakazono T,Mukai Y,Che FS
    IREN, a novel EF-hand motif-containing nuclease, functions in the degradation of nuclear DNA during the hypersensitive response cell death in rice.
    Biosci. Biotechnol. Biochem., 2016. 80(4): p. 748-60
    [PMID:26766411]