PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PSME_00050643-RA
Organism
Pseudotsuga menziesii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Pseudotsuga
Family MYB
Protein Properties Length: 476aa    MW: 53840.5 Da    PI: 8.9115
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PSME_00050643-RAgenomePRSView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding57.33.5e-1861106147
                       TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
   Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                       rg W + Ede+l ++v+q+G+ +W++Ia++++ gR++k+c++rw++ 
  PSME_00050643-RA  61 RGHWRPAEDEKLRELVEQYGPQNWNSIAEKLQ-GRSGKSCRLRWFNQ 106
                       899*****************************.***********996 PP
2Myb_DNA-binding58.81.2e-18113156146
                       TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
   Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 
                       r ++T+eE+e+l+ a++++G++ W+ Iar ++ gRt++ +k++w+ 
  PSME_00050643-RA 113 RRPFTEEEEERLLAAHRLHGNK-WAMIARLFP-GRTDNAVKNHWHV 156
                       679*******************.*********.***********96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129419.54356107IPR017930Myb domain
SMARTSM007173.7E-1560109IPR001005SANT/Myb domain
SuperFamilySSF466891.72E-2960154IPR009057Homeodomain-like
PfamPF002492.4E-1761106IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.602.1E-2762114IPR009057Homeodomain-like
CDDcd001676.19E-1464105No hitNo description
PROSITE profilePS5129427.061108162IPR017930Myb domain
SMARTSM007179.2E-16112160IPR001005SANT/Myb domain
PfamPF002494.9E-15113155IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.601.5E-21115161IPR009057Homeodomain-like
CDDcd001673.19E-7124155No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009737Biological Processresponse to abscisic acid
GO:2000652Biological Processregulation of secondary cell wall biogenesis
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 476 aa     Download sequence    Send to blast
MNSEHLLQAC AQTKLHLASQ WGEFETANRM TEPVLIDEEI ITDRQSVDVK DENSQAKMCP  60
RGHWRPAEDE KLRELVEQYG PQNWNSIAEK LQGRSGKSCR LRWFNQLDPR INRRPFTEEE  120
EERLLAAHRL HGNKWAMIAR LFPGRTDNAV KNHWHVIMAR KFRERSRIYG KRRSSCGHLM  180
RKTRPHSAHA AEHIEENSLS TFIDMYYRGC HEDAGISSSN ILGRRPRKLP HDSTLENINS  240
QIHGNGVILN PSGKRQGLEV VNPQGTPASI QGEAYKNRIM DSLCEIGMSN HVQSRKNLQE  300
ILFQQSMRPT SSKASSATSW LPIFSGSILP KPPDLAQGEF RTDHFPCPEP GKINGCLKIP  360
PIYNYTTSSF RHRNTDHRVP GAVAEAKEAQ LLPPDLVKGS TTSTYSPAHL QLSINPQSSP  420
STAYKEVRLV HQNKSYNGRE RNPCNSLESQ VADHGITDPD QQKETAFIDF LGVGAS
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A5e-31611617107B-MYB
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00145DAPTransfer from AT1G17950Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankEF6010660.0EF601066.1 Picea glauca R2R3-MYB transcription factor MYB3 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
TrEMBLQ27IN90.0Q27IN9_PINTA; R2R3-MYB transcription factor MYB3
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G69560.15e-57myb domain protein 105