PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | PSME_00050636-RA | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Pseudotsuga
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Family | MYB | ||||||||
Protein Properties | Length: 199aa MW: 22815.7 Da PI: 8.3869 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 54.5 | 2.8e-17 | 15 | 62 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 +g+WT+eEde+lv ++ +G g+W++ ++ g+ R++k+c++rw +yl PSME_00050636-RA 15 KGAWTKEEDERLVAFIEAHGEGSWRSLPKAAGLLRCGKSCRLRWINYL 62 79******************************99************97 PP | |||||||
2 | Myb_DNA-binding | 58.3 | 1.8e-18 | 68 | 113 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 rg++++eEd+l+++++ +lG++ W++Ia +++ gRt++++k++w++++ PSME_00050636-RA 68 RGNFSEEEDDLIIKLHSLLGNK-WSLIAGRLP-GRTDNEIKNYWNTHM 113 89********************.*********.************986 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51294 | 15.888 | 10 | 62 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 1.22E-30 | 13 | 109 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 4.2E-13 | 14 | 64 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 3.2E-15 | 15 | 62 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 5.8E-23 | 16 | 69 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 8.05E-10 | 17 | 62 | No hit | No description |
PROSITE profile | PS51294 | 28.682 | 63 | 117 | IPR017930 | Myb domain |
SMART | SM00717 | 1.9E-17 | 67 | 115 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 7.1E-17 | 68 | 112 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 2.6E-28 | 70 | 117 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 6.23E-12 | 70 | 113 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 199 aa Download sequence Send to blast |
MGRSPCCEKA HDNNKGAWTK EEDERLVAFI EAHGEGSWRS LPKAAGLLRC GKSCRLRWIN 60 YLRPDLKRGN FSEEEDDLII KLHSLLGNKW SLIAGRLPGR TDNEIKNYWN THMKRKLLSR 120 GLDPQSHRPL GKHCNTSLSS QFAPQHEIQA FQSPRTTEIA DSFQYDRPEN SAVERAASDA 180 KEAKERPDLN LDLCIWHLQ |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1h8a_C | 8e-30 | 14 | 117 | 26 | 128 | MYB TRANSFORMING PROTEIN |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor. {ECO:0000305}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | EF601076 | 0.0 | EF601076.1 Picea glauca R2R3-MYB transcription factor MYB13 mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_004957488.1 | 8e-89 | myb-related protein Hv1 | ||||
Swissprot | P81393 | 4e-85 | MYB08_ANTMA; Myb-related protein 308 | ||||
TrEMBL | A5JYF7 | 1e-124 | A5JYF7_PICGL; R2R3-MYB transcription factor MYB13 | ||||
STRING | Si030943m | 3e-88 | (Setaria italica) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G38620.1 | 1e-86 | myb domain protein 4 |
Publications ? help Back to Top | |||
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