PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | PSME_00050520-RA | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Pseudotsuga
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Family | NAC | ||||||||
Protein Properties | Length: 244aa MW: 28369.2 Da PI: 6.751 | ||||||||
Description | NAC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NAM | 136.5 | 1.7e-42 | 17 | 144 | 2 | 128 |
NAM 2 ppGfrFhPtdeelvveyLkkkvegkkleleev.ikevdiykvePwdLp.kkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkev 92 pGfrF Pt+eel+ +yLkk++++++ + ++ i+++d+y+++Pw+Lp + + +ek+w+fF++rd+k+ +r+nr tksgyWkatg+d++v PSME_00050520-RA 17 IPGFRFYPTEEELLGFYLKKRLQRDHQPNLDIiIPTLDLYQYDPWELPvLASDVGEKQWFFFVPRDNKKC-RHRPNRLTKSGYWKATGSDRAV 108 69********************99997666666***************556677999**********975.79******************** PP NAM 93 lskkgelvglkktLvfykgrapkgektdWvmheyrl 128 ++ + + lkk+L fy+grap g++t+W+m+ey++ PSME_00050520-RA 109 RNELCQCISLKKILLFYEGRAPLGQRTEWIMNEYKM 144 **99999***************************86 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101941 | 7.85E-43 | 10 | 174 | IPR003441 | NAC domain |
PROSITE profile | PS51005 | 48.206 | 16 | 174 | IPR003441 | NAC domain |
Pfam | PF02365 | 9.1E-22 | 18 | 143 | IPR003441 | NAC domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 244 aa Download sequence Send to blast |
MEEIYNDGAV QEELTVIPGF RFYPTEEELL GFYLKKRLQR DHQPNLDIII PTLDLYQYDP 60 WELPVLASDV GEKQWFFFVP RDNKKCRHRP NRLTKSGYWK ATGSDRAVRN ELCQCISLKK 120 ILLFYEGRAP LGQRTEWIMN EYKMPDLSSS PSKIVSSHVQ IKKVDMVLCR IYRKPTSQKS 180 IEEGTNLDSL DKEKLNFPAG DESSYEYKCD SITFNGNSCQ SNPMTEINVS SSGEWRGNMF 240 FCSK |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1ut4_A | 6e-39 | 13 | 179 | 14 | 170 | NO APICAL MERISTEM PROTEIN |
1ut4_B | 6e-39 | 13 | 179 | 14 | 170 | NO APICAL MERISTEM PROTEIN |
1ut7_A | 6e-39 | 13 | 179 | 14 | 170 | NO APICAL MERISTEM PROTEIN |
1ut7_B | 6e-39 | 13 | 179 | 14 | 170 | NO APICAL MERISTEM PROTEIN |
4dul_A | 6e-39 | 13 | 179 | 14 | 170 | NAC domain-containing protein 19 |
4dul_B | 6e-39 | 13 | 179 | 14 | 170 | NAC domain-containing protein 19 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor that acts as a floral repressor. Controls flowering time by negatively regulating CONSTANS (CO) expression in a GIGANTEA (GI)-independent manner. Regulates the plant cold response by positive regulation of the cold response genes COR15A and KIN1. May coordinate cold response and flowering time. {ECO:0000269|PubMed:17653269}. |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Circadian regulation with a peak of expression at dawn under continuous light conditions (PubMed:17653269). Circadian regulation with a peak of expression around dusk and lowest expression around dawn under continuous light conditions (at protein level) (PubMed:17653269). {ECO:0000269|PubMed:17653269}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_008645096.1 | 6e-55 | NAC domain-containing protein 35 | ||||
Swissprot | Q9ZVP8 | 6e-52 | NAC35_ARATH; NAC domain-containing protein 35 | ||||
TrEMBL | A0A075M5N5 | 2e-87 | A0A075M5N5_9SPER; NAC domain protein | ||||
STRING | GRMZM2G389557_P01 | 2e-55 | (Zea mays) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G02450.1 | 7e-54 | NAC domain containing protein 35 |
Publications ? help Back to Top | |||
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