PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PSME_00050513-RA
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Pseudotsuga
Family MYB
Protein Properties Length: 189aa    MW: 20915.4 Da    PI: 8.0698
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PSME_00050513-RAgenomePRSView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding39.99.7e-131454141
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHH CS
   Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqck 41
                      +g+WT++Ed++l+++++ +G g+W++ ++  g+ R++k+c+
  PSME_00050513-RA 14 KGAWTKQEDDRLIQYIQAHGEGCWRSLPKAAGLLRCGKSCR 54
                      79******************************99******8 PP

2Myb_DNA-binding27.47.8e-0954782348
                      -HHHHHHHHTTTS-HHHHHHHHHHHT CS
   Myb_DNA-binding 23 tWktIartmgkgRtlkqcksrwqkyl 48
                      +W++Ia +++ gRt++++k++w+++l
  PSME_00050513-RA 54 RWSLIAGRLP-GRTDNEIKNYWNSHL 78
                      4*********.************986 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.601.1E-13554IPR009057Homeodomain-like
PROSITE profilePS5129418.32982IPR017930Myb domain
SMARTSM007174.3E-161380IPR001005SANT/Myb domain
SuperFamilySSF466898.98E-151479IPR009057Homeodomain-like
PfamPF002494.1E-111454IPR001005SANT/Myb domain
CDDcd001672.70E-121678No hitNo description
Gene3DG3DSA:1.10.10.601.3E-125579IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 189 aa     Download sequence    Send to blast
MGRAPCCPNG DRNKGAWTKQ EDDRLIQYIQ AHGEGCWRSL PKAAGLLRCG KSCRWSLIAG  60
RLPGRTDNEI KNYWNSHLKR KLIGMGIDPL THRAFQKKSC GHDHSLSGNV RQLETESSDQ  120
IVEDFFRCPS ELSAVSEQVS NAATGIVRNG HPDLSLNLDL ELSITFRRAI NASGNEDVGN  180
SDRGESVLN
Functional Description ? help Back to Top
Source Description
UniProtTranscription repressor involved in regulation of protection against UV. Mediates transcriptional repression of CYP73A5, the gene encoding trans-cinnamate 4-monooxygenase, thereby regulating the accumulation of the UV-protectant compound sinapoylmalate. {ECO:0000269|PubMed:11080161}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Down-regulated by exposure to UV-B light. {ECO:0000269|PubMed:11080161}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010431803.17e-51PREDICTED: transcription repressor MYB4-like
SwissprotQ9SZP12e-50MYB4_ARATH; Transcription repressor MYB4
TrEMBLA9NTK02e-82A9NTK0_PICSI; Uncharacterized protein
STRINGXP_010431803.13e-50(Camelina sativa)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G38620.19e-53myb domain protein 4
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  2. Schenke D,Cai D,Scheel D
    Suppression of UV-B stress responses by flg22 is regulated at the chromatin level via histone modification.
    Plant Cell Environ., 2014. 37(7): p. 1716-21
    [PMID:24450952]
  3. Zhou M, et al.
    Changing a conserved amino acid in R2R3-MYB transcription repressors results in cytoplasmic accumulation and abolishes their repressive activity in Arabidopsis.
    Plant J., 2015. 84(2): p. 395-403
    [PMID:26332741]
  4. Zhang J, et al.
    Soybean SPX1 is an important component of the response to phosphate deficiency for phosphorus homeostasis.
    Plant Sci., 2016. 248: p. 82-91
    [PMID:27181950]
  5. Zhou M, et al.
    LNK1 and LNK2 Corepressors Interact with the MYB3 Transcription Factor in Phenylpropanoid Biosynthesis.
    Plant Physiol., 2017. 174(3): p. 1348-1358
    [PMID:28483877]
  6. Mondal SK,Roy S
    Genome-wide sequential, evolutionary, organizational and expression analyses of phenylpropanoid biosynthesis associated MYB domain transcription factors in Arabidopsis.
    J. Biomol. Struct. Dyn., 2018. 36(6): p. 1577-1601
    [PMID:28490275]
  7. Verma N,Burma PK
    Regulation of tapetum-specific A9 promoter by transcription factors AtMYB80, AtMYB1 and AtMYB4 in Arabidopsis thaliana and Nicotiana tabacum.
    Plant J., 2017. 92(3): p. 481-494
    [PMID:28849604]