PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | PSME_00050513-RA | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Pseudotsuga
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Family | MYB | ||||||||
Protein Properties | Length: 189aa MW: 20915.4 Da PI: 8.0698 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 39.9 | 9.7e-13 | 14 | 54 | 1 | 41 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqck 41 +g+WT++Ed++l+++++ +G g+W++ ++ g+ R++k+c+ PSME_00050513-RA 14 KGAWTKQEDDRLIQYIQAHGEGCWRSLPKAAGLLRCGKSCR 54 79******************************99******8 PP | |||||||
2 | Myb_DNA-binding | 27.4 | 7.8e-09 | 54 | 78 | 23 | 48 |
-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 23 tWktIartmgkgRtlkqcksrwqkyl 48 +W++Ia +++ gRt++++k++w+++l PSME_00050513-RA 54 RWSLIAGRLP-GRTDNEIKNYWNSHL 78 4*********.************986 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:1.10.10.60 | 1.1E-13 | 5 | 54 | IPR009057 | Homeodomain-like |
PROSITE profile | PS51294 | 18.32 | 9 | 82 | IPR017930 | Myb domain |
SMART | SM00717 | 4.3E-16 | 13 | 80 | IPR001005 | SANT/Myb domain |
SuperFamily | SSF46689 | 8.98E-15 | 14 | 79 | IPR009057 | Homeodomain-like |
Pfam | PF00249 | 4.1E-11 | 14 | 54 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 2.70E-12 | 16 | 78 | No hit | No description |
Gene3D | G3DSA:1.10.10.60 | 1.3E-12 | 55 | 79 | IPR009057 | Homeodomain-like |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 189 aa Download sequence Send to blast |
MGRAPCCPNG DRNKGAWTKQ EDDRLIQYIQ AHGEGCWRSL PKAAGLLRCG KSCRWSLIAG 60 RLPGRTDNEI KNYWNSHLKR KLIGMGIDPL THRAFQKKSC GHDHSLSGNV RQLETESSDQ 120 IVEDFFRCPS ELSAVSEQVS NAATGIVRNG HPDLSLNLDL ELSITFRRAI NASGNEDVGN 180 SDRGESVLN |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription repressor involved in regulation of protection against UV. Mediates transcriptional repression of CYP73A5, the gene encoding trans-cinnamate 4-monooxygenase, thereby regulating the accumulation of the UV-protectant compound sinapoylmalate. {ECO:0000269|PubMed:11080161}. |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Down-regulated by exposure to UV-B light. {ECO:0000269|PubMed:11080161}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_010431803.1 | 7e-51 | PREDICTED: transcription repressor MYB4-like | ||||
Swissprot | Q9SZP1 | 2e-50 | MYB4_ARATH; Transcription repressor MYB4 | ||||
TrEMBL | A9NTK0 | 2e-82 | A9NTK0_PICSI; Uncharacterized protein | ||||
STRING | XP_010431803.1 | 3e-50 | (Camelina sativa) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G38620.1 | 9e-53 | myb domain protein 4 |