PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | PSME_00050470-RA | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Pseudotsuga
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Family | MYB | ||||||||
Protein Properties | Length: 287aa MW: 32797.7 Da PI: 5.465 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 41 | 4.5e-13 | 15 | 63 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT.-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGgg.tWktIartmgkgRtlkqcksrwqkyl 48 rg WT+ Ed +l ++++ +G + W+ I+ + g++R++++c++rw++yl PSME_00050470-RA 15 RGVWTKTEDMILSEYIRVHGDDrGWTNIPPKAGLKRSGNSCRLRWLNYL 63 899*****************999************************97 PP | |||||||
2 | Myb_DNA-binding | 53.1 | 7.5e-17 | 69 | 114 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 rg+ +++E+el+++++++lG++ W++Ia +++ gRt++++k++w+++l PSME_00050470-RA 69 RGNISPDEEELIIRLHRLLGNR-WSLIAGRIP-GRTDNEIKNYWNSHL 114 7899******************.*********.************986 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51294 | 13.031 | 10 | 63 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 1.02E-24 | 13 | 110 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 5.1E-11 | 14 | 65 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 3.4E-12 | 15 | 63 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 3.8E-20 | 17 | 70 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 8.39E-8 | 18 | 63 | No hit | No description |
PROSITE profile | PS51294 | 26.298 | 64 | 118 | IPR017930 | Myb domain |
SMART | SM00717 | 6.9E-16 | 68 | 116 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 2.7E-15 | 69 | 114 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 5.2E-25 | 71 | 118 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 1.44E-11 | 73 | 114 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 287 aa Download sequence Send to blast |
MGRSPNCFSK EGLNRGVWTK TEDMILSEYI RVHGDDRGWT NIPPKAGLKR SGNSCRLRWL 60 NYLRPDIKRG NISPDEEELI IRLHRLLGNR WSLIAGRIPG RTDNEIKNYW NSHLSKKVLM 120 SMNKSEPNSR TQKLKRIRSQ LSPASPVQNH VIKTIPVKIT MAVRHSEMVR PIEFNSDGCS 180 NYSSSEYETF KLCNVEEIPE RVVEEAEGRN STTSTSSLED QESGPHSDNF GVDTATLDDT 240 LFDLDELSSP HWNELFSPSD NSTDLGIFEE FYRAGVAEMI EFEEIVF |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1h8a_C | 1e-23 | 13 | 118 | 25 | 128 | MYB TRANSFORMING PROTEIN |
Search in ModeBase |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: By nitrogen, salicylic acid, NaCl and abscisic acid (ABA). {ECO:0000269|PubMed:16463103, ECO:0000269|PubMed:18541146, ECO:0000269|PubMed:9839469}. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_009361685.2 | 3e-64 | PREDICTED: transcription factor TT2 | ||||
Swissprot | Q9S9K9 | 2e-53 | MYB3_ARATH; Transcription factor MYB3 | ||||
TrEMBL | A0A167V911 | 1e-103 | A0A167V911_PICAB; Transcription factor MYB31 | ||||
STRING | XP_009361685.1 | 1e-63 | (Pyrus x bretschneideri) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G22640.1 | 3e-47 | myb domain protein 3 |