PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PSME_00050445-RA
Organism
Pseudotsuga menziesii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Pseudotsuga
Family MYB
Protein Properties Length: 306aa    MW: 34388.9 Da    PI: 5.0073
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PSME_00050445-RAgenomePRSView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding44.73.1e-142267146
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
   Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46
                      +g+WT eEd +l  ++ ++G g+W+  a+t g++Rt+ +c++rw++
  PSME_00050445-RA 22 KGPWTLEEDTQLMGYISLHGEGRWSFLAKTAGLKRTGRSCRLRWLN 67
                      79******************************************98 PP
2Myb_DNA-binding44.63.4e-1475118146
                       TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
   Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 
                       r + T+eE  l+++++ ++G++ W++Iar ++ gRt++++k++w++
  PSME_00050445-RA  75 RSKITAEEGRLIIELHGLWGNR-WSRIARSLP-GRTDNDIKNYWRT 118
                       6678******************.*********.***********96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129415.0981769IPR017930Myb domain
SuperFamilySSF466891.95E-2820116IPR009057Homeodomain-like
SMARTSM007177.3E-102171IPR001005SANT/Myb domain
PfamPF002496.4E-122267IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.609.3E-212376IPR009057Homeodomain-like
CDDcd001675.88E-82469No hitNo description
PROSITE profilePS5129422.96570124IPR017930Myb domain
SMARTSM007177.6E-1374122IPR001005SANT/Myb domain
PfamPF002495.6E-1276118IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.605.8E-2177124IPR009057Homeodomain-like
CDDcd001671.22E-1079118No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 306 aa     Download sequence    Send to blast
MENRTCGGAS DIEDEEEAER RKGPWTLEED TQLMGYISLH GEGRWSFLAK TAGLKRTGRS  60
CRLRWLNSLR PDLKRSKITA EEGRLIIELH GLWGNRWSRI ARSLPGRTDN DIKNYWRTRI  120
KGKLNLQAED GSTGMDAENQ LQFDHVGSSY HPTSSQRPPD VDSIEPLTSF PMQNTEEIKV  180
QKNKSTDDIS PQVIPSHDGL QGEIHGPGQP GAALQKHLEE SANSMFENSF PYNFSVGSLV  240
NLLHSSEFCG DSATQDGTIS PPSYMVASPE AFSDSEAYLN RYSDVLWNMD QEDDHFFGSK  300
HSAFSY
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A7e-27221257109B-MYB
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_022873432.12e-53myb-related protein 305-like
STRINGXP_006405505.11e-52(Eutrema salsugineum)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G25340.18e-53myb domain protein 116