PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | PSME_00050372-RA | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Pseudotsuga
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Family | NAC | ||||||||
Protein Properties | Length: 403aa MW: 45905.4 Da PI: 6.7316 | ||||||||
Description | NAC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NAM | 168.8 | 1.8e-52 | 14 | 141 | 1 | 128 |
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevl 93 + pGfrFhPtdeelv +yL++kv++++l++ e ik++diyk++PwdLpk+++ +ekewyf+++rd+ky+++ r+nr+t++g+Wkatg+d++++ PSME_00050372-RA 14 MLPGFRFHPTDEELVGFYLRRKVQQRPLSI-ELIKQLDIYKYDPWDLPKMASIGEKEWYFYCPRDRKYRNSARPNRVTSAGFWKATGTDRPIY 105 579***************************.89***************888889*************************************** PP NAM 94 sk.kgelvglkktLvfykgrapkgektdWvmheyrl 128 s+ +++ +glkk+Lvfykgra kg ktdW+mhe+rl PSME_00050372-RA 106 SSdGTKCIGLKKSLVFYKGRAAKGIKTDWMMHEFRL 141 *956667***************************98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101941 | 7.32E-59 | 13 | 169 | IPR003441 | NAC domain |
PROSITE profile | PS51005 | 57.604 | 14 | 169 | IPR003441 | NAC domain |
Pfam | PF02365 | 1.1E-25 | 16 | 141 | IPR003441 | NAC domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0009733 | Biological Process | response to auxin | ||||
GO:0045770 | Biological Process | positive regulation of asymmetric cell division | ||||
GO:0048103 | Biological Process | somatic stem cell division | ||||
GO:0048829 | Biological Process | root cap development | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 403 aa Download sequence Send to blast |
MEQRDDIDQT DEMMLPGFRF HPTDEELVGF YLRRKVQQRP LSIELIKQLD IYKYDPWDLP 60 KMASIGEKEW YFYCPRDRKY RNSARPNRVT SAGFWKATGT DRPIYSSDGT KCIGLKKSLV 120 FYKGRAAKGI KTDWMMHEFR LPTTADSKNS LDKTLPPNDA WAICRIFKKN TIAHRVLSHA 180 WAPPLAERRV ESISSPMNSD MVSGNCMGAV NFIHDPEEQS NETRNQTSTS SNLSNSQSSD 240 HQGYSHDFQP KNAEISMDAS YSTGLHESDK VESSKSMPSF CNFKSMCLPN LEVPNNYYSN 300 MDPLSLKGTL DLVSCMLQMS PMPEFAVRTP SSDITAAFND TKTNYQNLSF FQPDATSDCH 360 EDIFLKNNIN NGHHLSPRSA SSNNPLQFPS QLYDVLKSNV SWD |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1ut4_A | 2e-54 | 7 | 175 | 6 | 171 | NO APICAL MERISTEM PROTEIN |
1ut4_B | 2e-54 | 7 | 175 | 6 | 171 | NO APICAL MERISTEM PROTEIN |
1ut7_A | 2e-54 | 7 | 175 | 6 | 171 | NO APICAL MERISTEM PROTEIN |
1ut7_B | 2e-54 | 7 | 175 | 6 | 171 | NO APICAL MERISTEM PROTEIN |
3swm_A | 3e-54 | 7 | 175 | 9 | 174 | NAC domain-containing protein 19 |
3swm_B | 3e-54 | 7 | 175 | 9 | 174 | NAC domain-containing protein 19 |
3swm_C | 3e-54 | 7 | 175 | 9 | 174 | NAC domain-containing protein 19 |
3swm_D | 3e-54 | 7 | 175 | 9 | 174 | NAC domain-containing protein 19 |
3swp_A | 3e-54 | 7 | 175 | 9 | 174 | NAC domain-containing protein 19 |
3swp_B | 3e-54 | 7 | 175 | 9 | 174 | NAC domain-containing protein 19 |
3swp_C | 3e-54 | 7 | 175 | 9 | 174 | NAC domain-containing protein 19 |
3swp_D | 3e-54 | 7 | 175 | 9 | 174 | NAC domain-containing protein 19 |
4dul_A | 2e-54 | 7 | 175 | 6 | 171 | NAC domain-containing protein 19 |
4dul_B | 2e-54 | 7 | 175 | 6 | 171 | NAC domain-containing protein 19 |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_020083440.1 | 1e-117 | putative NAC domain-containing protein 94 | ||||
TrEMBL | A0A199V147 | 1e-116 | A0A199V147_ANACO; Protein FEZ (Fragment) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G26870.1 | 2e-96 | NAC family protein |