PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PSME_00050330-RA
Organism
Pseudotsuga menziesii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Pseudotsuga
Family MYB
Protein Properties Length: 253aa    MW: 28876.6 Da    PI: 8.4342
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PSME_00050330-RAgenomePRSView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding41.72.8e-131461148
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
   Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                      +g+WT++Ed +l+  ++ +G g W+  ++  g+ R++k+c++rw +yl
  PSME_00050330-RA 14 KGAWTQQEDARLIAHIRAHGEGAWRCLPKAAGLLRCGKSCRLRWINYL 61
                      79******************************99************97 PP
2Myb_DNA-binding62.86.7e-2067111147
                       TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
   Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                       rg++T+eEdel+++++ +lG++ W++Iar+++ gRt++++k++w+++
  PSME_00050330-RA  67 RGNFTEEEDELIIKLHSLLGNK-WSLIARRLP-GRTDNEIKNYWNTH 111
                       89********************.*********.************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129413.408961IPR017930Myb domain
SuperFamilySSF466891.46E-2812108IPR009057Homeodomain-like
SMARTSM007172.1E-91363IPR001005SANT/Myb domain
PfamPF002492.6E-111461IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.602.0E-211568IPR009057Homeodomain-like
CDDcd001678.11E-71661No hitNo description
PROSITE profilePS5129430.18762116IPR017930Myb domain
SMARTSM007175.1E-1966114IPR001005SANT/Myb domain
PfamPF002498.6E-1867111IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.601.1E-2869116IPR009057Homeodomain-like
CDDcd001671.01E-1369112No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 253 aa     Download sequence    Send to blast
MGRCPCCEKV HTNKGAWTQQ EDARLIAHIR AHGEGAWRCL PKAAGLLRCG KSCRLRWINY  60
LRPDLKRGNF TEEEDELIIK LHSLLGNKWS LIARRLPGRT DNEIKNYWNT HIKRKLLSRG  120
LDRKTRCSLC NTTLGSPPAN SDHELSALQS PRTAEMTDFF QHDHWESSAI EPDVASKDEE  180
HPDLNLDLCI SLPSNSSLAE NRAVDSNFNS GRGLWRDDRV QQKYSDGRCE SRYCVGNNAG  240
FSHRVCFIYR VGL
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1h8a_C4e-291311626128MYB TRANSFORMING PROTEIN
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor. {ECO:0000305}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT1012541e-122BT101254.1 Picea glauca clone GQ0082_F08 mRNA sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010930777.15e-83myb-related protein 308
SwissprotP813935e-82MYB08_ANTMA; Myb-related protein 308
TrEMBLA9NYS61e-108A9NYS6_PICSI; Uncharacterized protein
STRINGXP_008783376.11e-81(Phoenix dactylifera)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G38620.13e-81myb domain protein 4
Publications ? help Back to Top
  1. Jackson D,Culianez-Macia F,Prescott AG,Roberts K,Martin C
    Expression patterns of myb genes from Antirrhinum flowers.
    Plant Cell, 1991. 3(2): p. 115-25
    [PMID:1840903]