PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PSME_00050228-RA
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Pseudotsuga
Family MYB
Protein Properties Length: 487aa    MW: 54079.7 Da    PI: 5.4009
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PSME_00050228-RAgenomePRSView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding49.41e-151966148
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
   Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                      +g W++eEd++l+++  + G g+W+ +a+  g+ R++k+c++rw +yl
  PSME_00050228-RA 19 KGLWSPEEDDKLINYMMKNGQGCWSDVAKQAGLQRCGKSCRLRWINYL 66
                      678*******************************************97 PP

2Myb_DNA-binding50.16.4e-1672115146
                       TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
   Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 
                       rg+++++E++l+++++  lG++ W+ Ia++++ gRt++++k++w++
  PSME_00050228-RA  72 RGAFSPQEEQLIIHLHSILGNR-WSQIAARLP-GRTDNEIKNFWNS 115
                       89********************.*********.***********96 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.601.1E-241369IPR009057Homeodomain-like
PROSITE profilePS5129418.4471466IPR017930Myb domain
SuperFamilySSF466897.03E-2916113IPR009057Homeodomain-like
SMARTSM007171.8E-121868IPR001005SANT/Myb domain
PfamPF002494.5E-151966IPR001005SANT/Myb domain
CDDcd001671.21E-102266No hitNo description
PROSITE profilePS5129426.05367121IPR017930Myb domain
Gene3DG3DSA:1.10.10.604.4E-2670122IPR009057Homeodomain-like
SMARTSM007172.8E-1571119IPR001005SANT/Myb domain
PfamPF002497.0E-1572115IPR001005SANT/Myb domain
CDDcd001673.22E-1174114No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009751Biological Processresponse to salicylic acid
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0050832Biological Processdefense response to fungus
GO:1901348Biological Processpositive regulation of secondary cell wall biogenesis
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 487 aa     Download sequence    Send to blast
MSCTTGGLAS PISKPKLRKG LWSPEEDDKL INYMMKNGQG CWSDVAKQAG LQRCGKSCRL  60
RWINYLRPDL KRGAFSPQEE QLIIHLHSIL GNRWSQIAAR LPGRTDNEIK NFWNSCIKKK  120
LKHLSASTNH NKSISASNRT TNSSITPLSE SSAQPLEIMP TRYQPPNAFN HEVPTAENQF  180
CIPDVLALRH EHVQNQNQFS IDQDSATNNL ISQLWNSNSI SVSTHESFSH AFMSPSLQTQ  240
GHSIKTAVKP CDQISWSTPL TRETAGPHAC NYSLGCSIPA LVESESLKEN FKNDAGDQIN  300
ENEIIYSSTA SSVITAWSTN SYSDAEYCTV DPHDQVGSIL EDYVSHEKTT DQPCPPLNSS  360
VQFSAPAIRW TAEQSNDEEY DCKDRLNLRY DVNLGYPNNA NNRQNAYQLP QIEEGVHGDQ  420
WNCARIPNME EANSTTPTST LLGGGSGQFE FECDGDAGGQ VTAWAHDVMY TDIHNAASDL  480
LGQIYFG
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A3e-28151213108B-MYB
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00599PBMTransfer from AT5G12870Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT1078830.0BT107883.1 Picea glauca clone GQ03113_N22 mRNA sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
TrEMBLB1PPT60.0B1PPT6_PINPS; R2R3-Myb4 transcription factor (Fragment)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G12870.14e-66myb domain protein 46