PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | PSME_00050228-RA | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Pseudotsuga
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Family | MYB | ||||||||
Protein Properties | Length: 487aa MW: 54079.7 Da PI: 5.4009 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 49.4 | 1e-15 | 19 | 66 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 +g W++eEd++l+++ + G g+W+ +a+ g+ R++k+c++rw +yl PSME_00050228-RA 19 KGLWSPEEDDKLINYMMKNGQGCWSDVAKQAGLQRCGKSCRLRWINYL 66 678*******************************************97 PP | |||||||
2 | Myb_DNA-binding | 50.1 | 6.4e-16 | 72 | 115 | 1 | 46 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 rg+++++E++l+++++ lG++ W+ Ia++++ gRt++++k++w++ PSME_00050228-RA 72 RGAFSPQEEQLIIHLHSILGNR-WSQIAARLP-GRTDNEIKNFWNS 115 89********************.*********.***********96 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:1.10.10.60 | 1.1E-24 | 13 | 69 | IPR009057 | Homeodomain-like |
PROSITE profile | PS51294 | 18.447 | 14 | 66 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 7.03E-29 | 16 | 113 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 1.8E-12 | 18 | 68 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 4.5E-15 | 19 | 66 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 1.21E-10 | 22 | 66 | No hit | No description |
PROSITE profile | PS51294 | 26.053 | 67 | 121 | IPR017930 | Myb domain |
Gene3D | G3DSA:1.10.10.60 | 4.4E-26 | 70 | 122 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 2.8E-15 | 71 | 119 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 7.0E-15 | 72 | 115 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 3.22E-11 | 74 | 114 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0009751 | Biological Process | response to salicylic acid | ||||
GO:0045893 | Biological Process | positive regulation of transcription, DNA-templated | ||||
GO:0050832 | Biological Process | defense response to fungus | ||||
GO:1901348 | Biological Process | positive regulation of secondary cell wall biogenesis | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 487 aa Download sequence Send to blast |
MSCTTGGLAS PISKPKLRKG LWSPEEDDKL INYMMKNGQG CWSDVAKQAG LQRCGKSCRL 60 RWINYLRPDL KRGAFSPQEE QLIIHLHSIL GNRWSQIAAR LPGRTDNEIK NFWNSCIKKK 120 LKHLSASTNH NKSISASNRT TNSSITPLSE SSAQPLEIMP TRYQPPNAFN HEVPTAENQF 180 CIPDVLALRH EHVQNQNQFS IDQDSATNNL ISQLWNSNSI SVSTHESFSH AFMSPSLQTQ 240 GHSIKTAVKP CDQISWSTPL TRETAGPHAC NYSLGCSIPA LVESESLKEN FKNDAGDQIN 300 ENEIIYSSTA SSVITAWSTN SYSDAEYCTV DPHDQVGSIL EDYVSHEKTT DQPCPPLNSS 360 VQFSAPAIRW TAEQSNDEEY DCKDRLNLRY DVNLGYPNNA NNRQNAYQLP QIEEGVHGDQ 420 WNCARIPNME EANSTTPTST LLGGGSGQFE FECDGDAGGQ VTAWAHDVMY TDIHNAASDL 480 LGQIYFG |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1a5j_A | 3e-28 | 15 | 121 | 3 | 108 | B-MYB |
Search in ModeBase |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00599 | PBM | Transfer from AT5G12870 | Download |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | BT107883 | 0.0 | BT107883.1 Picea glauca clone GQ03113_N22 mRNA sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
TrEMBL | B1PPT6 | 0.0 | B1PPT6_PINPS; R2R3-Myb4 transcription factor (Fragment) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G12870.1 | 4e-66 | myb domain protein 46 |