PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PSME_00050219-RA
Organism
Pseudotsuga menziesii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Pseudotsuga
Family GATA
Protein Properties Length: 277aa    MW: 31609.3 Da    PI: 10.4574
Description GATA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PSME_00050219-RAgenomePRSView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GATA54.31.8e-17189223135
              GATA   1 CsnCgttkTplWRrgpdgnktLCnaCGlyyrkkgl 35 
                       C+ C+t  TplWR+gp g+k+LCnaCG+ ++k ++
  PSME_00050219-RA 189 CAECKTNRTPLWRNGPHGPKSLCNACGIQFKKIRK 223
                       ********************************876 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5011412.558183219IPR000679Zinc finger, GATA-type
SuperFamilySSF577161.05E-12183231No hitNo description
SMARTSM004011.3E-14183235IPR000679Zinc finger, GATA-type
Gene3DG3DSA:3.30.50.103.2E-15185225IPR013088Zinc finger, NHR/GATA-type
CDDcd002021.95E-10188220No hitNo description
PfamPF003207.8E-16189223IPR000679Zinc finger, GATA-type
PROSITE patternPS003440189214IPR000679Zinc finger, GATA-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0008270Molecular Functionzinc ion binding
GO:0043565Molecular Functionsequence-specific DNA binding
GO:0044212Molecular Functiontranscription regulatory region DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 277 aa     Download sequence    Send to blast
MLRGALCARQ MYGHNHYKKF WLKKMEETED KQMQDSLHTL QPEGFGSIIF WHSSERFRPS  60
LEIKDRIKST IRVSSVRSGV GSKNCEQNLA ASEKDLPDGS EIHHALSIGM QMHMPYDADP  120
RNNPRKSVNI FPLQEEGHEE RKLQENGKKS SAKESLQSLR RFLHIGENHL VKTGAMDAEF  180
PDAAVARKCA ECKTNRTPLW RNGPHGPKSL CNACGIQFKK IRKREQQKVG SRLPSVSSIR  240
QMTKSANNKT SMNMIHCREM QPLPQRRTLC ARKAPPP
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00110ampDAPTransfer from AT2G18380Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G18380.19e-19GATA transcription factor 20