PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | PSME_00050198-RA | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Pseudotsuga
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Family | LBD | ||||||||
Protein Properties | Length: 118aa MW: 12410.4 Da PI: 6.6675 | ||||||||
Description | LBD family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | DUF260 | 82.1 | 8.3e-26 | 25 | 99 | 27 | 101 |
DUF260 27 pkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkaelallkeel 101 + +f +vhk+FGasnv+kll +lp +r +a+ ++ yeA+ar++dP+yG+v++i++lqqql++l+aela ++++l PSME_00050198-RA 25 ATHFTAVHKIFGASNVSKLLLHLPMPDRCEAVVTISYEAQARLQDPIYGCVAHIFALQQQLASLQAELAFVQAQL 99 579*******************************************************************99985 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50891 | 12.913 | 1 | 99 | IPR004883 | Lateral organ boundaries, LOB |
Pfam | PF03195 | 1.6E-23 | 24 | 96 | IPR004883 | Lateral organ boundaries, LOB |
Sequence ? help Back to Top |
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Protein Sequence Length: 118 aa Download sequence Send to blast |
MQVVAALGEI ILGVVVAAET LMTGATHFTA VHKIFGASNV SKLLLHLPMP DRCEAVVTIS 60 YEAQARLQDP IYGCVAHIFA LQQQLASLQA ELAFVQAQLA SRVSSGSASI SANHPVIS |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5ly0_A | 1e-19 | 9 | 118 | 21 | 130 | LOB family transfactor Ramosa2.1 |
5ly0_B | 1e-19 | 9 | 118 | 21 | 130 | LOB family transfactor Ramosa2.1 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Involved in lateral root formation. Regulated by the transcriptional activators ARF7 and ARF19. {ECO:0000269|PubMed:17259263}. |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: By auxin. {ECO:0000269|PubMed:15659631, ECO:0000269|PubMed:17259263}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_021814837.1 | 1e-40 | LOB domain-containing protein 29-like | ||||
Swissprot | Q9M2J7 | 1e-36 | LBD29_ARATH; LOB domain-containing protein 29 | ||||
TrEMBL | D5A9D3 | 7e-47 | D5A9D3_PICSI; Uncharacterized protein | ||||
STRING | cassava4.1_026776m | 9e-39 | (Manihot esculenta) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G58190.1 | 9e-31 | lateral organ boundaries-domain 29 |
Publications ? help Back to Top | |||
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