PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | PSME_00050136-RA | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Pseudotsuga
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Family | NAC | ||||||||
Protein Properties | Length: 408aa MW: 46038.4 Da PI: 8.1984 | ||||||||
Description | NAC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NAM | 170.8 | 4.3e-53 | 41 | 168 | 1 | 128 |
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevl 93 lppGfrF Ptdeelvv+yL+kk++++++++ +i+evd+yk++Pw+Lp k+ +ekewyfF++rd+ky++g+r+nra+ sgyWkatg dk++ PSME_00050136-RA 41 LPPGFRFFPTDEELVVHYLCKKAASQNIPV-PIIAEVDLYKYDPWQLPDKALFGEKEWYFFTPRDRKYPNGSRPNRAAGSGYWKATGADKPIN 132 79****************************.88***************8777899************************************** PP NAM 94 sk.kgelvglkktLvfykgrapkgektdWvmheyrl 128 +k +++ vg+kk Lvfy g+apkg+kt+W+mheyrl PSME_00050136-RA 133 AKgGKKRVGIKKALVFYAGKAPKGSKTNWIMHEYRL 168 *966777***************************98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101941 | 4.45E-64 | 37 | 194 | IPR003441 | NAC domain |
PROSITE profile | PS51005 | 61.277 | 41 | 194 | IPR003441 | NAC domain |
Pfam | PF02365 | 7.0E-27 | 42 | 168 | IPR003441 | NAC domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0009611 | Biological Process | response to wounding | ||||
GO:0009788 | Biological Process | negative regulation of abscisic acid-activated signaling pathway | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 408 aa Download sequence Send to blast |
MVSRRKELKG PAIAKAGQRI ESTEQEDLNM VRRNAEAELQ LPPGFRFFPT DEELVVHYLC 60 KKAASQNIPV PIIAEVDLYK YDPWQLPDKA LFGEKEWYFF TPRDRKYPNG SRPNRAAGSG 120 YWKATGADKP INAKGGKKRV GIKKALVFYA GKAPKGSKTN WIMHEYRLAD VSRPARKKGS 180 LRLDDWVLCR IYNKKISAEK LALEQKEGPM DAPMEAIDEK DMENQPASTE VEHSGIEQNN 240 PSSDNLRKLG PSPTSHNAVP PGSYPMNANI NLQNDSFQNT TSHFNGSTLK APVQNIAFNS 300 IPSSINHQWT NYNSTDLVSR LHTDSSSSKP SSSSDPISEK EEVQSSFRVE NFSQQQPQSV 360 FNSSLEGLQN PFSHLDHLNF FDSYQDYFTG LTTSDYLPRF NPNDMLFH |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
3ulx_A | 7e-87 | 33 | 200 | 7 | 174 | Stress-induced transcription factor NAC1 |
Search in ModeBase |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00121 | DAP | Transfer from AT1G01720 | Download |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_008792531.1 | 1e-102 | NAC domain-containing protein 68-like isoform X2 | ||||
TrEMBL | A0A0D6R3P9 | 1e-172 | A0A0D6R3P9_ARACU; Uncharacterized protein | ||||
STRING | GSMUA_Achr4P02390_001 | 1e-100 | (Musa acuminata) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G01720.1 | 1e-95 | NAC family protein |