PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PSME_00050134-RA
Organism
Pseudotsuga menziesii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Pseudotsuga
Family ERF
Protein Properties Length: 425aa    MW: 47508.9 Da    PI: 4.6796
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PSME_00050134-RAgenomePRSView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP256.66.4e-18100149255
               AP2   2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                       ++ GVr+++ +grWvAeI+d +   ++ r +lg+f taeeAa+a+++a+  l+g
  PSME_00050134-RA 100 RFVGVRQRP-SGRWVAEIKDTT---QKIRMWLGTFETAEEAARAYDEAACLLRG 149
                       789******.7*********32...35**********************99987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000182.77E-3199156No hitNo description
Gene3DG3DSA:3.30.730.101.8E-27100156IPR001471AP2/ERF domain
SuperFamilySSF541719.15E-19100157IPR016177DNA-binding domain
SMARTSM003803.1E-36100163IPR001471AP2/ERF domain
PROSITE profilePS5103219.585100157IPR001471AP2/ERF domain
PfamPF008471.4E-12100149IPR001471AP2/ERF domain
PRINTSPR003671.9E-7101112IPR001471AP2/ERF domain
PRINTSPR003671.9E-7123139IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0000302Biological Processresponse to reactive oxygen species
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009723Biological Processresponse to ethylene
GO:0035865Biological Processcellular response to potassium ion
GO:0048528Biological Processpost-embryonic root development
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 425 aa     Download sequence    Send to blast
MDSLPSFTMS ASNGSSLTHP YSLRSASLQS SNCFNKPEAC AAPTAQFLAM AVQPSANTNH  60
VNANSNNLHA NFNPPITTGF DQSSGAMQTM MKNSNSRRKR FVGVRQRPSG RWVAEIKDTT  120
QKIRMWLGTF ETAEEAARAY DEAACLLRGS NTRTNFVPTV NSCKNSALAS RINRLLSLRK  180
DSTASANSKS IIKEDCKDRH DDADDNQNDS FKSSTNYDVS EDSNEDSLPI EQSPSCTSSF  240
SNYVCSSSSS SSSAMDDDMD QASLRQQNGE KQPHFSHDIH TQHGQIYSSV TEEEEMKNQS  300
RSILTFNLSN FDKNHFIDPI SIEEEMINQS RSISTPDLFN TNKEEERNHF SMEDEMSGYS  360
CFSSSAEYFW PLDFGLDIQF PVDEFPVIDD LPALSMSDYH DHARASCHVQ PEFCPQSDYL  420
SDLIR
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A1e-1596162168ATERF1
3gcc_A1e-1596162168ATERF1
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00521DAPTransfer from AT5G19790Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMap-Retrieve
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G19790.12e-24related to AP2 11