PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | PSME_00049990-RA | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Pseudotsuga
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Family | MYB | ||||||||
Protein Properties | Length: 445aa MW: 49617.8 Da PI: 6.5045 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 56.6 | 6.1e-18 | 59 | 106 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 +g+WT+eEd +l+++++++G+g+W++ +++ g++R++k+c++rw +yl PSME_00049990-RA 59 KGPWTEEEDAKLLECIARHGTGNWTSLPAKAGLKRCGKSCRLRWTNYL 106 79********************************************97 PP | |||||||
2 | Myb_DNA-binding | 50 | 6.8e-16 | 113 | 155 | 2 | 46 |
SSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS Myb_DNA-binding 2 grWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 +r+T +E++l+vd+++ G++ W++Ia+ ++ gRt++++k++w++ PSME_00049990-RA 113 DRFTSQEEQLIVDLHAAIGSR-WSLIAAQLP-GRTDNDVKNHWNS 155 69*******************.*********.***********96 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:1.10.10.60 | 2.3E-24 | 50 | 109 | IPR009057 | Homeodomain-like |
PROSITE profile | PS51294 | 25.888 | 54 | 110 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 7.11E-30 | 56 | 153 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 1.9E-15 | 58 | 108 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 4.3E-17 | 59 | 106 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 4.21E-12 | 61 | 106 | No hit | No description |
Gene3D | G3DSA:1.10.10.60 | 1.9E-23 | 110 | 161 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 6.6E-13 | 111 | 159 | IPR001005 | SANT/Myb domain |
PROSITE profile | PS51294 | 18.723 | 111 | 161 | IPR017930 | Myb domain |
CDD | cd00167 | 4.04E-9 | 114 | 157 | No hit | No description |
Pfam | PF00249 | 2.2E-13 | 114 | 155 | IPR001005 | SANT/Myb domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0048658 | Biological Process | anther wall tapetum development | ||||
GO:0052545 | Biological Process | callose localization | ||||
GO:0055046 | Biological Process | microgametogenesis | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 445 aa Download sequence Send to blast |
MHGVQLNSSS ASGLKISESL NISFLWLFLH RKYIVLKILG LKDLRMGRPP CCDKNNVNKG 60 PWTEEEDAKL LECIARHGTG NWTSLPAKAG LKRCGKSCRL RWTNYLRPDL KHDRFTSQEE 120 QLIVDLHAAI GSRWSLIAAQ LPGRTDNDVK NHWNSRLRKK LCGMGIDPVT HRPISQILAE 180 YAGNVGLSGG SEDQIAKARI SCLSKDLRTA HAPINYGTGN LHQQQDQDQY KHRYTLLSDP 240 LKYPLHDAHG DLTDMNSQNS FWHLLAQLHE IKTVASASTQ LEKISMSNPL NSVESESISM 300 AGEISGDHLH IANNNSQFTW REFLLEPDDL VIPRSPLEPL WDFTAEISSP AMGSSAYHSC 360 ELPSQLQMPQ NTESAIIATA LTHENYTINS QMQMQASPSY SADSCCSRNS IVGSATSEFS 420 SSFDTLLLNS EGSLFWEFPD LENLS |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1a5j_A | 1e-30 | 59 | 161 | 7 | 108 | B-MYB |
Search in ModeBase |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
STRING | ERN04429 | 3e-86 | (Amborella trichopoda) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G28470.1 | 2e-71 | MYB family protein |