PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PSME_00049990-RA
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Pseudotsuga
Family MYB
Protein Properties Length: 445aa    MW: 49617.8 Da    PI: 6.5045
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PSME_00049990-RAgenomePRSView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding56.66.1e-1859106148
                       TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
   Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 
                       +g+WT+eEd +l+++++++G+g+W++ +++ g++R++k+c++rw +yl
  PSME_00049990-RA  59 KGPWTEEEDAKLLECIARHGTGNWTSLPAKAGLKRCGKSCRLRWTNYL 106
                       79********************************************97 PP

2Myb_DNA-binding506.8e-16113155246
                       SSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
   Myb_DNA-binding   2 grWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 
                       +r+T +E++l+vd+++  G++ W++Ia+ ++ gRt++++k++w++
  PSME_00049990-RA 113 DRFTSQEEQLIVDLHAAIGSR-WSLIAAQLP-GRTDNDVKNHWNS 155
                       69*******************.*********.***********96 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.602.3E-2450109IPR009057Homeodomain-like
PROSITE profilePS5129425.88854110IPR017930Myb domain
SuperFamilySSF466897.11E-3056153IPR009057Homeodomain-like
SMARTSM007171.9E-1558108IPR001005SANT/Myb domain
PfamPF002494.3E-1759106IPR001005SANT/Myb domain
CDDcd001674.21E-1261106No hitNo description
Gene3DG3DSA:1.10.10.601.9E-23110161IPR009057Homeodomain-like
SMARTSM007176.6E-13111159IPR001005SANT/Myb domain
PROSITE profilePS5129418.723111161IPR017930Myb domain
CDDcd001674.04E-9114157No hitNo description
PfamPF002492.2E-13114155IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0048658Biological Processanther wall tapetum development
GO:0052545Biological Processcallose localization
GO:0055046Biological Processmicrogametogenesis
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 445 aa     Download sequence    Send to blast
MHGVQLNSSS ASGLKISESL NISFLWLFLH RKYIVLKILG LKDLRMGRPP CCDKNNVNKG  60
PWTEEEDAKL LECIARHGTG NWTSLPAKAG LKRCGKSCRL RWTNYLRPDL KHDRFTSQEE  120
QLIVDLHAAI GSRWSLIAAQ LPGRTDNDVK NHWNSRLRKK LCGMGIDPVT HRPISQILAE  180
YAGNVGLSGG SEDQIAKARI SCLSKDLRTA HAPINYGTGN LHQQQDQDQY KHRYTLLSDP  240
LKYPLHDAHG DLTDMNSQNS FWHLLAQLHE IKTVASASTQ LEKISMSNPL NSVESESISM  300
AGEISGDHLH IANNNSQFTW REFLLEPDDL VIPRSPLEPL WDFTAEISSP AMGSSAYHSC  360
ELPSQLQMPQ NTESAIIATA LTHENYTINS QMQMQASPSY SADSCCSRNS IVGSATSEFS  420
SSFDTLLLNS EGSLFWEFPD LENLS
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A1e-30591617108B-MYB
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
STRINGERN044293e-86(Amborella trichopoda)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G28470.12e-71MYB family protein