PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PSME_00049982-RA
Organism
Pseudotsuga menziesii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Pseudotsuga
Family LBD
Protein Properties Length: 96aa    MW: 10911.2 Da    PI: 4.4937
Description LBD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PSME_00049982-RAgenomePRSView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF26031.16.7e-103416199
            DUF260 61 lvyeAearardPvyGavgvilklqqqleqlkaelallke 99
                      +vyeA+ r+rdPv+Ga+gvi++lq+++++l+++la++++
  PSME_00049982-RA  3 IVYEARERLRDPVHGALGVINDLQKKVAELESHLASREA 41
                      89******************************9998775 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS508918.626143IPR004883Lateral organ boundaries, LOB
PfamPF031952.9E-7338IPR004883Lateral organ boundaries, LOB
Sequence ? help Back to Top
Protein Sequence    Length: 96 aa     Download sequence    Send to blast
MHIVYEARER LRDPVHGALG VINDLQKKVA ELESHLASRE AALANVSLQH ANLVTLVTGY  60
DPKFYSASMQ ENEDTYTKQD GLDDVDPLQL WEPFWT
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
TrEMBLB8LQI91e-33B8LQI9_PICSI; Uncharacterized protein
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G07900.12e-14LOB domain-containing protein 1