PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PSME_00049940-RA
Organism
Pseudotsuga menziesii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Pseudotsuga
Family HSF
Protein Properties Length: 411aa    MW: 45497.6 Da    PI: 6.6414
Description HSF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PSME_00049940-RAgenomePRSView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HSF_DNA-bind107.78.9e-34151042100
                       HHHHHHHHHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEEESXXXXXXXXXX CS
      HSF_DNA-bind   2 FlkklyeiledeelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiweFkhksFkkgkkell 94 
                       Fl+k+y+++++++++ ++sws ++nsf+v++++ef+  +Lp+yFkh+nf+SFvRQLn+YgF+k++ e+         weF+++ F +g+++ll
  PSME_00049940-RA  15 FLTKTYDMVDNPTTNAMVSWSPSSNSFIVWNPTEFSGVLLPTYFKHNNFSSFVRQLNTYGFHKIDLER---------WEFANEGFLRGHQHLL 98 
                       9********************999****************************************9999.........**************** PP

                       XXXXXX CS
      HSF_DNA-bind  95 ekikrk 100
                       ++i+r 
  PSME_00049940-RA  99 KNIHRC 104
                       ***996 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF467854.08E-3310103IPR011991Winged helix-turn-helix DNA-binding domain
Gene3DG3DSA:1.10.10.101.5E-3711104IPR011991Winged helix-turn-helix DNA-binding domain
SMARTSM004159.4E-5611104IPR000232Heat shock factor (HSF)-type, DNA-binding
PfamPF004472.5E-3015103IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000569.3E-191538IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000569.3E-195365IPR000232Heat shock factor (HSF)-type, DNA-binding
PROSITE patternPS0043405478IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000569.3E-196678IPR000232Heat shock factor (HSF)-type, DNA-binding
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 411 aa     Download sequence    Send to blast
MEGSQNDNSN GPPPFLTKTY DMVDNPTTNA MVSWSPSSNS FIVWNPTEFS GVLLPTYFKH  60
NNFSSFVRQL NTYGFHKIDL ERWEFANEGF LRGHQHLLKN IHRCKPFHSH SQQQQKGESF  120
SGGACVEIKQ LEYETEKLRQ EKQGLNPNFV AQLVQHHDKI AHIATTNKKR RLPNHDEVLD  180
IGENGCTGSL VSKLYDHGKS DAFNRDSLDK LETSMDAFKN FFDDLLADAH DKSKDSGSPP  240
SHSSRSSLTE MHGNPCFPDM PVHLGVSDIY TSSPLSDLNS SSRLPDMSIS LRSRDMQASE  300
GLVGSIHYDI LCNFSLSPHS SLHEVSKIDA IGKAILSGSP ENRSVIGSKT GSNDANLEAV  360
DVEVRFPYGA AKTTLEDGSI NGKGRRTGPG GIGKGMGNEI AKKRINDVFW E
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5d5u_B7e-241310327128Heat shock factor protein 1
5d5v_B7e-241310327128Heat shock factor protein 1
5d5v_D7e-241310327128Heat shock factor protein 1
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT1175890.0BT117589.1 Picea glauca clone GQ03904_J01 mRNA sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006854048.22e-68heat stress transcription factor A-1 isoform X1
TrEMBLA0A0C9S8X01e-112A0A0C9S8X0_9SPER; TSA: Wollemia nobilis Ref_Wollemi_Transcript_2945_1895 transcribed RNA sequence
STRINGERN155151e-67(Amborella trichopoda)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G32330.12e-52heat shock transcription factor A1D