PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PSME_00049907-RA
Organism
Pseudotsuga menziesii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Pseudotsuga
Family NAC
Protein Properties Length: 369aa    MW: 40826.1 Da    PI: 9.8906
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PSME_00049907-RAgenomePRSView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM135.24.5e-42111712128
               NAM  12 eelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevlsk.kgelvglk 103
                       eelvv+yL+kk++++ +++  +i+evd+yk++Pw+ p k+  +ekewyfF++r++ky++g+r+nra+ sgyWk tg dk++ +k +++ vg+k
  PSME_00049907-RA   1 EELVVHYLCKKAASQIIPV-PIIAEVDLYKYDPWQRPDKALFGEKEWYFFTPRNRKYPNGSRPNRAAGSGYWKVTGADKPINAKgGKKRVGIK 92 
                       7******************.88***************7777899***************************************966777**** PP

               NAM 104 ktLvfykgrapkgektdWvmheyrl 128
                       k Lvfy g+apkg+kt+W+mheyrl
  PSME_00049907-RA  93 KALVFYAGKAPKGSKTNWIMHEYRL 117
                       ***********************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF023652.3E-191117IPR003441NAC domain
SuperFamilySSF1019411.03E-451119IPR003441NAC domain
PROSITE profilePS5100545.1811145IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 369 aa     Download sequence    Send to blast
EELVVHYLCK KAASQIIPVP IIAEVDLYKY DPWQRPDKAL FGEKEWYFFT PRNRKYPNGS  60
RPNRAAGSGY WKVTGADKPI NAKGGKKRVG IKKALVFYAG KAPKGSKTNW IMHEYRLADV  120
SRPARKKGSL RNNPSSDNLR KLGPSPTSHN AVPPGSYLMN ANINLHNDSF QNTTSPFNGS  180
TLKAPVQNIA FNSIPSSINH QWTNYNSTDL VSRLHTDSSS SKPSSSSDPI SEKEEVQSSF  240
RVENFSQEQP QSVFNSSLEV PCSSLILAAM THIFPTEAEY KANTFTDAAI FTANPCAKST  300
TPGFPKPSEP FEALTSILAR LKPELEPRFR PEFCRSSQAL RTVGEPARSS IAEIKTTAPV  360
TFLDLLDLG
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3ulx_A8e-62111726140Stress-induced transcription factor NAC1
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqNP_001313965.19e-75NAC domain-containing protein 2-like
TrEMBLA9NZG82e-87A9NZG8_PICSI; Uncharacterized protein
STRINGGorai.005G088800.15e-74(Gossypium raimondii)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G01720.19e-70NAC family protein