PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PSME_00049894-RA
Organism
Pseudotsuga menziesii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Pseudotsuga
Family B3
Protein Properties Length: 515aa    MW: 58544.1 Da    PI: 8.8914
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PSME_00049894-RAgenomePRSView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B344.82.3e-142771899
                      --HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE-S CS
                B3 18 lpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvfrk 99
                      +p kf+++ ++   ++ +++le +sg+ W   l  +  +++++++ GWk+Fv+++ ++ gDf+vFk++g+s f   v++f +
  PSME_00049894-RA  2 IPPKFVDQVKNH-MGP-DIILEGPSGQLWHAIL--CCMGSGMTIEHGWKKFVSDHAIELGDFLVFKHSGKSHF--IVQIFGR 77
                      899999887543.344.9***************..444455789**********************9998988..9999987 PP
2B337.25.1e-122533331599
                       -EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE-S CS
                B3  15 rlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvfrk 99 
                       r+++p  f++++  +   ++  tl  ++ ++W v++  ++ +++y+  kGW++F++  +Lk+ D+++F+l++++  +l+v++frk
  PSME_00049894-RA 253 RISFPLGFTRSFFPN--YEVGFTLLGPDKEKWPVTFPGNNMKQSYI--KGWRNFADHYNLKQEDICIFELVNKKLLTLKVHFFRK 333
                       678888899888533..34569999***********6666666654..6**********************99**********97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5086314.466178IPR003340B3 DNA binding domain
SMARTSM010198.0E-5278IPR003340B3 DNA binding domain
CDDcd100171.61E-15275No hitNo description
SuperFamilySSF1019361.43E-19280IPR015300DNA-binding pseudobarrel domain
PfamPF023627.6E-12277IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.101.6E-17280IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.108.0E-15231333IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019361.71E-16233333IPR015300DNA-binding pseudobarrel domain
SMARTSM010195.9E-11238334IPR003340B3 DNA binding domain
PROSITE profilePS5086310.405239334IPR003340B3 DNA binding domain
CDDcd100171.23E-15241332No hitNo description
PfamPF023622.9E-10253333IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009909Biological Processregulation of flower development
GO:0010048Biological Processvernalization response
GO:0005654Cellular Componentnucleoplasm
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 515 aa     Download sequence    Send to blast
KIPPKFVDQV KNHMGPDIIL EGPSGQLWHA ILCCMGSGMT IEHGWKKFVS DHAIELGDFL  60
VFKHSGKSHF IVQIFGRSGC EKQSALTVTS IELETEKLNH EKQGDKIKED TTERLDTCIT  120
DSAQCTAIPD YKIYTCSAAP RRYETLHQNL PAYFHQSTRQ ESSAAPSECR KISNTGKPVK  180
GVERLMCVLS SDDKIRMQDF NSQLKKSKIY VSKHIHRKPG VQEAINEAMS HKIRNPALLI  240
VMRRTHVCAG GIRISFPLGF TRSFFPNYEV GFTLLGPDKE KWPVTFPGNN MKQSYIKGWR  300
NFADHYNLKQ EDICIFELVN KKLLTLKVHF FRKADRTSSI KKGGISEMAH ETSRNKDCSI  360
NTKVKSQEIQ VRIKPEEEFS PNVPLISLGA NHLIPGANHH VEIVKGEQCR LGLLKPGCQE  420
AKESSGCRIH CHKKCCSLLK ETNDDDFITD GHVYSVYNNS SEVMTYDPSV GNRKGYVLTN  480
RNILLNNDRD HHMPTLMMDE KPYFLRSERE KTKHA
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT1076580.0BT107658.1 Picea glauca clone GQ03111_B04 mRNA sequence.
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G18990.13e-24B3 family protein