PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PSME_00049859-RA
Organism
Pseudotsuga menziesii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Pseudotsuga
Family LBD
Protein Properties Length: 163aa    MW: 17862.2 Da    PI: 7.505
Description LBD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PSME_00049859-RAgenomePRSView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF2601383.3e-43211201100
            DUF260   1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkae 93 
                       +CaaCk+lrr+Ca+dCv+ap+fp+++p+kfa vhk+FGasnv k+l++lp ++r d++ss+vyeA+ar+rdPvyG+v+vi++lqqq++ l+a+
  PSME_00049859-RA  21 PCAACKLLRRRCANDCVFAPHFPSDDPHKFAHVHKVFGASNVNKMLQDLPLQQRGDTVSSMVYEANARVRDPVYGCVAVISSLQQQVSLLQAQ 113
                       7******************************************************************************************** PP

            DUF260  94 lallkee 100
                        a++++e
  PSME_00049859-RA 114 FAVTQAE 120
                       *999876 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5089125.49220121IPR004883Lateral organ boundaries, LOB
PfamPF031955.2E-4321118IPR004883Lateral organ boundaries, LOB
Sequence ? help Back to Top
Protein Sequence    Length: 163 aa     Download sequence    Send to blast
MGREGAASSS ISGKKQNSMS PCAACKLLRR RCANDCVFAP HFPSDDPHKF AHVHKVFGAS  60
NVNKMLQDLP LQQRGDTVSS MVYEANARVR DPVYGCVAVI SSLQQQVSLL QAQFAVTQAE  120
VIRIRLMLQQ ATALSNLVEA HGFQDYILES ETQGHSDDEA KNT
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5ly0_A9e-442012310113LOB family transfactor Ramosa2.1
5ly0_B9e-442012310113LOB family transfactor Ramosa2.1
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010274089.13e-65PREDICTED: LOB domain-containing protein 4
SwissprotQ9SHE95e-56LBD4_ARATH; LOB domain-containing protein 4
TrEMBLA0A1U8B4236e-64A0A1U8B423_NELNU; LOB domain-containing protein 4
STRINGXP_010274089.11e-64(Nelumbo nucifera)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G31320.14e-50LOB domain-containing protein 4