PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PSME_00049819-RA

Organism

Pseudotsuga menziesii

Taxonomic ID

3357

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Pseudotsuga

Family

bZIP

Protein Properties

Length: 508aa MW: 55128.8 Da PI: 8.1958

Description

bZIP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PSME_00049819-RA	genome	PRS	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	bZIP_1	32.1	2.6e-10	323	381	5	63
CHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS bZIP_1 5 krerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkkeleelkkevaklksev 63 kr++r NR +A rs +RK +i eLe+kv++L++e ++L +l +l+ l++e+ PSME_00049819-RA 323 KRAKRIWANRQSAARSKERKMRYISELERKVQTLQTEATTLSAQLTMLQRDTTGLTNEN 381 9**********************************************998888777776 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00338	3.0E-16	319	383	IPR004827	Basic-leucine zipper domain
PROSITE profile	PS50217	10.978	321	384	IPR004827	Basic-leucine zipper domain
SuperFamily	SSF57959	4.36E-11	323	375	No hit	No description
Gene3D	G3DSA:1.20.5.170	1.1E-10	323	378	No hit	No description
Pfam	PF00170	1.5E-8	323	379	IPR004827	Basic-leucine zipper domain
CDD	cd14703	5.33E-25	324	373	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 508 aa Download sequence Send to blast
MEKAGEGHEG IIGQPDLPGK KSNNNNSSNR NHNHNHNNNN NIGTSSAQPT SGGGFNPHSS 60 QSQPSQPPSR YVGYPSTTNA FTVKRNPSQV PSPSGPSLSP VPSVSSMRST VSHSVDNQMQ 120 DSASSPVPRT LPSNTQLTTM SPHRFSTDVN KMPDIPPRNR GHRRAHSEIA VRLPDDISFD 180 RELGVVGSDC PTLSDEADDD LFSMYIDMDK FTVFSASPTQ AMATMTQSGS EGGITPPSQL 240 IHHSRSVSMD GVFSGFQSNN SGLGSGGVTS DKPRARHQHS QSMDGFSSIK PELLLSTAEA 300 SLAETKKAMS AAKLADLAAI DPKRAKRIWA NRQSAARSKE RKMRYISELE RKVQTLQTEA 360 TTLSAQLTML QRDTTGLTNE NNELKLRLQS MEQQVHLRDA LNDALREEVQ RLKLATGQGL 420 ANSGHMMNFC ASSFNPSQPY FQVPHQSSHT YLAAQQLQQL HLQSQHSALN LRNGGTGSSQ 480 GHRDNLSEFS MTTEGLPVST SQEAGCNF

Sequence ? help Back to Top

Protein Sequence Length: 508 aa Download sequence Send to blast

MEKAGEGHEG IIGQPDLPGK KSNNNNSSNR NHNHNHNNNN NIGTSSAQPT SGGGFNPHSS  60
QSQPSQPPSR YVGYPSTTNA FTVKRNPSQV PSPSGPSLSP VPSVSSMRST VSHSVDNQMQ  120
DSASSPVPRT LPSNTQLTTM SPHRFSTDVN KMPDIPPRNR GHRRAHSEIA VRLPDDISFD  180
RELGVVGSDC PTLSDEADDD LFSMYIDMDK FTVFSASPTQ AMATMTQSGS EGGITPPSQL  240
IHHSRSVSMD GVFSGFQSNN SGLGSGGVTS DKPRARHQHS QSMDGFSSIK PELLLSTAEA  300
SLAETKKAMS AAKLADLAAI DPKRAKRIWA NRQSAARSKE RKMRYISELE RKVQTLQTEA  360
TTLSAQLTML QRDTTGLTNE NNELKLRLQS MEQQVHLRDA LNDALREEVQ RLKLATGQGL  420
ANSGHMMNFC ASSFNPSQPY FQVPHQSSHT YLAAQQLQQL HLQSQHSALN LRNGGTGSSQ  480
GHRDNLSEFS MTTEGLPVST SQEAGCNF

Functional Description ? help Back to Top
Source	Description
UniProt	Putative transcription factor with an activatory role.

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00126	DAP	Transfer from AT1G06070	Download

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	-	Retrieve

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010268265.1	1e-128	PREDICTED: probable transcription factor PosF21
Refseq	XP_010268266.1	1e-128	PREDICTED: probable transcription factor PosF21
Refseq	XP_010268267.1	1e-128	PREDICTED: probable transcription factor PosF21
Swissprot	Q04088	1e-101	POF21_ARATH; Probable transcription factor PosF21
TrEMBL	A0A2R6XND5	1e-138	A0A2R6XND5_MARPO; Uncharacterized protein
STRING	XP_010268265.1	1e-127	(Nelumbo nucifera)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G06070.1	1e-94	bZIP family protein

Publications ? help Back to Top
Duarte JM, et al. Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis. Mol. Biol. Evol., 2006. 23(2): p. 469-78 [PMID:16280546] Xu C, et al. Control of auxin-induced callus formation by bZIP59-LBD complex in Arabidopsis regeneration. Nat Plants, 2018. 4(2): p. 108-115 [PMID:29358751]