PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PSME_00049704-RA
Organism
Pseudotsuga menziesii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Pseudotsuga
Family B3
Protein Properties Length: 344aa    MW: 39180.2 Da    PI: 4.2591
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PSME_00049704-RAgenomePRSView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B350.24.5e-16291081499
                       T-EE--HHH.HTT...---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE-S CS
                B3  14 grlvlpkkfaeeh...ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvfrk 99 
                       + l +p kfa++    +g+     +++le +sg+ W  kl  +  + +++++ GWk+Fv+++ ++ gDf+vFk++g+s f   v++f +
  PSME_00049704-RA  29 QFLKIPPKFADQVrdwMGP-----DIILEGPSGQLWHAKL--CPMGTGMTIEHGWKNFVSDHAIELGDFLVFKHSGKSHF--IVQIFGR 108
                       5689******999655434.....8***************..999999*************************9998988..9999987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM010192.2E-1023109IPR003340B3 DNA binding domain
SuperFamilySSF1019366.47E-2129111IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.101.8E-1929111IPR015300DNA-binding pseudobarrel domain
PfamPF023621.8E-1329108IPR003340B3 DNA binding domain
CDDcd100172.78E-1730106No hitNo description
PROSITE profilePS5086312.98531109IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 344 aa     Download sequence    Send to blast
MWPDFSWNGT HMQINELLPD SGTCTEMLQF LKIPPKFADQ VRDWMGPDII LEGPSGQLWH  60
AKLCPMGTGM TIEHGWKNFV SDHAIELGDF LVFKHSGKSH FIVQIFGRSG CEKQSAFTVT  120
SIELETEKLN HDKQEDKNKN IQNPSFIVSA MSVDTKDKIK EDTKEILDTH ITDFVLEHTA  180
IPDDKMYTWS AAPKILSNPW IEPWLMDCAV SNPWIELWPV RHGLCHDPVE CVVSLWSLYC  240
AVARGCSLSS TVWPVDALPL RLCSVETLEY QMRPDTRWDV DPEDDPQINE EERPDETQHG  300
LVGVPLVTPE VETESDFELD GNTPIDGDFM QQMHQEDQSM DLSP
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G06220.12e-11B3 family protein