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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | PSME_00049571-RA | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Pseudotsuga
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Family | LBD | ||||||||
Protein Properties | Length: 236aa MW: 25927.9 Da PI: 6.5002 | ||||||||
Description | LBD family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | DUF260 | 114.8 | 5.6e-36 | 7 | 104 | 1 | 96 |
DUF260 1 aCaaCkvlrrkCakdCvlapyfpaeq..pkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlk 91 +C aCk+lrrkC+k+Cv+apyf++++ + +f ++hk+FGasn +kll +lp eer d+++++ yeA+ar+ dPvyG+v++i++lq+q+++lk PSME_00049571-RA 7 SCGACKFLRRKCVKGCVFAPYFCSDEmgAPHFGAIHKVFGASNFSKLLMHLPVEERYDTVATVSYEARARLLDPVYGCVSHIFALQHQVANLK 99 6***********************995569*************************************************************** PP DUF260 92 aelal 96 ++la+ PSME_00049571-RA 100 EKLAV 104 *9986 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50891 | 21.582 | 6 | 109 | IPR004883 | Lateral organ boundaries, LOB |
Pfam | PF03195 | 1.6E-34 | 7 | 103 | IPR004883 | Lateral organ boundaries, LOB |
Sequence ? help Back to Top |
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Protein Sequence Length: 236 aa Download sequence Send to blast |
MGGGGASCGA CKFLRRKCVK GCVFAPYFCS DEMGAPHFGA IHKVFGASNF SKLLMHLPVE 60 ERYDTVATVS YEARARLLDP VYGCVSHIFA LQHQVANLKE KLAVGYAQLA ACSTSNGASQ 120 SPKNGYRMQS EMPSLISNSN SSSPYDQQYM IPWGDLQSIP SENVAVNNYE EEAKENENSW 180 GSFSVGTQRA IHYPSTSQET DVFKDAEIFS AQKVSNNNYY RDGDLQDVAS ALLRRT |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5ly0_A | 2e-34 | 3 | 109 | 7 | 111 | LOB family transfactor Ramosa2.1 |
5ly0_B | 2e-34 | 3 | 109 | 7 | 111 | LOB family transfactor Ramosa2.1 |
Search in ModeBase |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
STRING | XP_010262268.1 | 3e-51 | (Nelumbo nucifera) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G42440.1 | 6e-49 | LBD family protein |