PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | PSME_00049570-RA | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Pseudotsuga
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Family | LBD | ||||||||
Protein Properties | Length: 117aa MW: 12867 Da PI: 8.2864 | ||||||||
Description | LBD family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | DUF260 | 109.2 | 3.2e-34 | 7 | 96 | 1 | 88 |
DUF260 1 aCaaCkvlrrkCakdCvlapyfpaeq..pkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqle 88 +C aCk+lrrkC+k+Cv+apyf++++ + +f +hk+FGasn +kll +lp eer d+++++ yeA+ar+ dPvyG+v+++++lq+q+ PSME_00049570-RA 7 SCGACKFLRRKCVKGCVFAPYFCSDEmgAPHFGEIHKVFGASNFSKLLMHLPVEERYDTVATVSYEAQARLLDPVYGCVSHLFALQHQVP 96 6***********************995569*********************************************************986 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50891 | 20.222 | 6 | 109 | IPR004883 | Lateral organ boundaries, LOB |
Pfam | PF03195 | 6.6E-33 | 7 | 97 | IPR004883 | Lateral organ boundaries, LOB |
Sequence ? help Back to Top |
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Protein Sequence Length: 117 aa Download sequence Send to blast |
MGGGGASCGA CKFLRRKCVK GCVFAPYFCS DEMGAPHFGE IHKVFGASNF SKLLMHLPVE 60 ERYDTVATVS YEAQARLLDP VYGCVSHLFA LQHQVPLSIQ SLLSSKPNCF YFITPKL |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5ly0_A | 1e-33 | 3 | 95 | 7 | 97 | LOB family transfactor Ramosa2.1 |
5ly0_B | 1e-33 | 3 | 95 | 7 | 97 | LOB family transfactor Ramosa2.1 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Acts as positive regulator of adventitious (crown) root formation by promoting its initiation (PubMed:15829602, PubMed:15960615). Acts as positive regulator of lateral root formation. Regulated by the auxin response factor and transcriptional activator ARF23/ARF1 (PubMed:15829602). Involved in auxin-mediated cell dedifferentiation, and may promote the initial cell division in the pericycle cells adjacent to the peripheral vascular cylinder at the base of the stem (PubMed:15960615). May act upstream of the gene regulatory network controlling adventitious root (crown) development (PubMed:21806801). {ECO:0000269|PubMed:15829602, ECO:0000269|PubMed:15960615, ECO:0000269|PubMed:21806801}. |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Induced by auxin (PubMed:15829602, PubMed:15960615). Induced by ethylene (PubMed:15960615). {ECO:0000269|PubMed:15829602, ECO:0000269|PubMed:15960615}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_006443870.1 | 8e-47 | LOB domain-containing protein 29 | ||||
Refseq | XP_006480093.1 | 8e-47 | LOB domain-containing protein 29-like | ||||
Refseq | XP_009398033.1 | 6e-47 | PREDICTED: LOB domain-containing protein 29 | ||||
Swissprot | Q5UG13 | 2e-44 | LBD_ORYSJ; LOB domain-containing protein CRL1 | ||||
TrEMBL | A0A067FYE5 | 2e-45 | A0A067FYE5_CITSI; Uncharacterized protein | ||||
TrEMBL | A0A2H5QGT7 | 1e-45 | A0A2H5QGT7_CITUN; Uncharacterized protein | ||||
TrEMBL | M0SRY0 | 1e-45 | M0SRY0_MUSAM; Uncharacterized protein | ||||
STRING | XP_006480093.1 | 3e-46 | (Citrus sinensis) | ||||
STRING | GSMUA_Achr4P25190_001 | 2e-46 | (Musa acuminata) | ||||
STRING | XP_006443870.1 | 3e-46 | (Citrus clementina) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G42440.1 | 2e-46 | LBD family protein |
Publications ? help Back to Top | |||
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