PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | PSME_00049552-RA | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Pseudotsuga
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Family | NAC | ||||||||
Protein Properties | Length: 186aa MW: 21355.6 Da PI: 9.84 | ||||||||
Description | NAC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NAM | 162.9 | 1.2e-50 | 28 | 154 | 2 | 128 |
NAM 2 ppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevls 94 ppGfrF Ptdeelvv+yL+kk++++ +++ +i+evd+yk++Pw+L k+ +ekewyfF++rd+ky++g+r++r++ sgyWk+tg dk++ + PSME_00049552-RA 28 PPGFRFFPTDEELVVHYLCKKAASQIIPV-PIIEEVDLYKYDPWQLLDKALFGEKEWYFFTPRDRKYPNGSRPKRVAGSGYWKSTGADKPINA 119 9****************************.88**************86667799*************************************** PP NAM 95 k.kgelvglkktLvfykgrapkgektdWvmheyrl 128 k +++ vg+kk Lvfy g+apkg+kt+W+mhey l PSME_00049552-RA 120 KgGKKRVGIKKALVFYAGKAPKGSKTNWIMHEYPL 154 966777***************************76 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101941 | 1.23E-55 | 21 | 156 | IPR003441 | NAC domain |
PROSITE profile | PS51005 | 51.969 | 27 | 179 | IPR003441 | NAC domain |
Pfam | PF02365 | 2.1E-26 | 28 | 153 | IPR003441 | NAC domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 186 aa Download sequence Send to blast |
MGSSLGDFHE EQPWILKNMD CHEHNQWPPG FRFFPTDEEL VVHYLCKKAA SQIIPVPIIE 60 EVDLYKYDPW QLLDKALFGE KEWYFFTPRD RKYPNGSRPK RVAGSGYWKS TGADKPINAK 120 GGKKRVGIKK ALVFYAGKAP KGSKTNWIMH EYPLADVSRP ARKKGSLRVS WYISSLLCFE 180 SAVLTT |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1ut4_A | 5e-68 | 16 | 169 | 6 | 154 | NO APICAL MERISTEM PROTEIN |
1ut4_B | 5e-68 | 16 | 169 | 6 | 154 | NO APICAL MERISTEM PROTEIN |
1ut7_A | 5e-68 | 16 | 169 | 6 | 154 | NO APICAL MERISTEM PROTEIN |
1ut7_B | 5e-68 | 16 | 169 | 6 | 154 | NO APICAL MERISTEM PROTEIN |
3swm_A | 5e-68 | 16 | 169 | 9 | 157 | NAC domain-containing protein 19 |
3swm_B | 5e-68 | 16 | 169 | 9 | 157 | NAC domain-containing protein 19 |
3swm_C | 5e-68 | 16 | 169 | 9 | 157 | NAC domain-containing protein 19 |
3swm_D | 5e-68 | 16 | 169 | 9 | 157 | NAC domain-containing protein 19 |
3swp_A | 5e-68 | 16 | 169 | 9 | 157 | NAC domain-containing protein 19 |
3swp_B | 5e-68 | 16 | 169 | 9 | 157 | NAC domain-containing protein 19 |
3swp_C | 5e-68 | 16 | 169 | 9 | 157 | NAC domain-containing protein 19 |
3swp_D | 5e-68 | 16 | 169 | 9 | 157 | NAC domain-containing protein 19 |
4dul_A | 5e-68 | 16 | 169 | 6 | 154 | NAC domain-containing protein 19 |
4dul_B | 5e-68 | 16 | 169 | 6 | 154 | NAC domain-containing protein 19 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor involved in stress response. {ECO:0000250|UniProtKB:Q7F2L3}. |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Induced by salt stress (PubMed:18813954, PubMed:20632034). Induced by dehydration, cold stress and methyl jasmonate (PubMed:20632034). {ECO:0000269|PubMed:18813954, ECO:0000269|PubMed:20632034}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_008792530.1 | 7e-77 | NAC domain-containing protein 2-like isoform X1 | ||||
Swissprot | Q52QH4 | 9e-74 | NAC68_ORYSJ; NAC domain-containing protein 68 | ||||
TrEMBL | A0A0D6R3P9 | 9e-88 | A0A0D6R3P9_ARACU; Uncharacterized protein | ||||
STRING | XP_008792530.1 | 3e-76 | (Phoenix dactylifera) | ||||
STRING | GSMUA_Achr4P02390_001 | 2e-76 | (Musa acuminata) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G77450.1 | 5e-76 | NAC domain containing protein 32 |