PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PSME_00049459-RA

Organism

Pseudotsuga menziesii

Taxonomic ID

3357

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Pseudotsuga

Family

bZIP

Protein Properties

Length: 475aa MW: 51328.9 Da PI: 7.4245

Description

bZIP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PSME_00049459-RA	genome	PRS	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	bZIP_1	31.2	4.8e-10	279	337	5	63
CHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS bZIP_1 5 krerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkkeleelkkevaklksev 63 kr++r NR +A rs +RK +i eLe++v++L++e ++L +l +l+ l++e+ PSME_00049459-RA 279 KRAKRILANRQSAVRSKERKMRYISELERRVQTLQTEATTLSAQLTMLQRDTTGLTTEN 337 9*********************************************9998877777665 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00338	1.9E-16	275	339	IPR004827	Basic-leucine zipper domain
PROSITE profile	PS50217	11.001	277	340	IPR004827	Basic-leucine zipper domain
Gene3D	G3DSA:1.20.5.170	1.1E-8	279	327	No hit	No description
SuperFamily	SSF57959	5.42E-11	279	331	No hit	No description
Pfam	PF00170	1.0E-8	279	336	IPR004827	Basic-leucine zipper domain
CDD	cd14703	2.18E-23	280	329	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 475 aa Download sequence Send to blast
MEGLGDGYEA FVGRLKMDMA TANGPKNTTG NSLSNPSQSQ QVQQARYVGY PSSTNAFTVT 60 REAKPALSDS SGNSVAMDVS MQEPVSSSGA VGVAEPSGNR GPSQNFSTDV SRMPDVPPRR 120 GGHRRAQSEI AFRLPDDIMF DGDLGFSGFD MPTVSDDATE AEDLISMYMD MEKLTSFGEP 180 LNAAAGEGSK LPSGADTNRA PHHSRSLSVD AVFSGLEGNL EGTRGNLGSA GPSRPRHRHS 240 NSMDSSSSLQ INQLSSESLE TKKAMAAKKL QELALIDPKR AKRILANRQS AVRSKERKMR 300 YISELERRVQ TLQTEATTLS AQLTMLQRDT TGLTTENNEL KLRLQAMEQQ AQLRDALNEA 360 LRDKVQRLKI ATGQIAPNNT NAFNMSAPAQ QLPLNRSFFP PTQHSHRLNQ QFQSFQHSTS 420 ALNNQPLMGQ SQVHQNFPHY GPAGQLQGLV GSQGGSAVES EVSSSSINLP SSSSF

Sequence ? help Back to Top

Protein Sequence Length: 475 aa Download sequence Send to blast

MEGLGDGYEA FVGRLKMDMA TANGPKNTTG NSLSNPSQSQ QVQQARYVGY PSSTNAFTVT  60
REAKPALSDS SGNSVAMDVS MQEPVSSSGA VGVAEPSGNR GPSQNFSTDV SRMPDVPPRR  120
GGHRRAQSEI AFRLPDDIMF DGDLGFSGFD MPTVSDDATE AEDLISMYMD MEKLTSFGEP  180
LNAAAGEGSK LPSGADTNRA PHHSRSLSVD AVFSGLEGNL EGTRGNLGSA GPSRPRHRHS  240
NSMDSSSSLQ INQLSSESLE TKKAMAAKKL QELALIDPKR AKRILANRQS AVRSKERKMR  300
YISELERRVQ TLQTEATTLS AQLTMLQRDT TGLTTENNEL KLRLQAMEQQ AQLRDALNEA  360
LRDKVQRLKI ATGQIAPNNT NAFNMSAPAQ QLPLNRSFFP PTQHSHRLNQ QFQSFQHSTS  420
ALNNQPLMGQ SQVHQNFPHY GPAGQLQGLV GSQGGSAVES EVSSSSINLP SSSSF

Functional Description ? help Back to Top
Source	Description
UniProt	Putative transcription factor with an activatory role.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	EF676623	0.0	EF676623.1 Picea sitchensis clone WS02744_N16 unknown mRNA.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_024404099.1	1e-133	transcription factor RF2a-like
Swissprot	Q04088	5e-83	POF21_ARATH; Probable transcription factor PosF21
TrEMBL	B8LLI3	0.0	B8LLI3_PICSI; Uncharacterized protein
STRING	PP1S20_116V6.1	1e-132	(Physcomitrella patens)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G31370.5	7e-80	bZIP family protein

Publications ? help Back to Top
Duarte JM, et al. Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis. Mol. Biol. Evol., 2006. 23(2): p. 469-78 [PMID:16280546] Xu C, et al. Control of auxin-induced callus formation by bZIP59-LBD complex in Arabidopsis regeneration. Nat Plants, 2018. 4(2): p. 108-115 [PMID:29358751]