PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PSME_00049306-RA
Organism
Pseudotsuga menziesii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Pseudotsuga
Family MYB
Protein Properties Length: 515aa    MW: 57100.4 Da    PI: 6.0781
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PSME_00049306-RAgenomePRSView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding60.92.7e-192976148
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
   Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                      +g+WT+eEd++l d+++q+G g+W+t +++ g+ R++k+c++rw +yl
  PSME_00049306-RA 29 KGPWTPEEDQKLTDYIQQHGHGSWRTLPKHAGLLRCGKSCRLRWTNYL 76
                      79******************************99************97 PP
2Myb_DNA-binding51.42.5e-1682127148
                       TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
   Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 
                       rg+++ eE++ +++++  lG++ W++Ia++++ gRt++++k++w+++l
  PSME_00049306-RA  82 RGKFSFEEEQTIIQLHGVLGNK-WSAIASHLP-GRTDNEIKNYWNTHL 127
                       89********************.*********.************996 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.607.0E-262079IPR009057Homeodomain-like
PROSITE profilePS5129417.3182476IPR017930Myb domain
SuperFamilySSF466894.87E-3126123IPR009057Homeodomain-like
SMARTSM007175.2E-152878IPR001005SANT/Myb domain
PfamPF002498.3E-172976IPR001005SANT/Myb domain
CDDcd001675.08E-123176No hitNo description
PROSITE profilePS5129425.59377131IPR017930Myb domain
Gene3DG3DSA:1.10.10.601.3E-2680131IPR009057Homeodomain-like
SMARTSM007171.6E-1681129IPR001005SANT/Myb domain
PfamPF002492.6E-1582127IPR001005SANT/Myb domain
CDDcd001676.94E-1284127No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009733Biological Processresponse to auxin
GO:0009737Biological Processresponse to abscisic acid
GO:0009751Biological Processresponse to salicylic acid
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 515 aa     Download sequence    Send to blast
MKLFQEKSAL ERACNMGRAP CCDKDGLKKG PWTPEEDQKL TDYIQQHGHG SWRTLPKHAG  60
LLRCGKSCRL RWTNYLRPDI KRGKFSFEEE QTIIQLHGVL GNKWSAIASH LPGRTDNEIK  120
NYWNTHLKKR LLQMGIDPVT HRPRIDLFNF SNMSQLLAPA SLSHMAAQWE RARLEAVTTD  180
YLRVLAAYRS AAMIQQASQT QTQSATMDAD HLMSYLRNQL GDAAVWNMPD TMNSAMAQAN  240
WALNSENLGS SDSNALATQI IMEQLQVPAA QIMQNLQSQT QNNAELSAPL NGTSMTQHSS  300
PSSTLSSLDG FHTLKAEQLN NISNRSNVPS SHDSAKISNQ ALLQDQGYQN LMNASAALVQ  360
QQSRSQDNNS PSTDQLVTSP ILWPDQEEFF GISKNSNSES VPALVSTTSS PNIFNDSSDM  420
FHDASSVQNS QNCMTSESMS THGYGLPQDL FLDFSLETTK QQNVETMAAP ATSTTHMISG  480
SSSWSEIQNS HEDGGDYWSN MLKYVGESSI NNLAL
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A2e-29271315108B-MYB
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00180DAPTransfer from AT1G34670Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankEF6010740.0EF601074.1 Picea glauca R2R3-MYB transcription factor MYB11 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
TrEMBLA5JYF50.0A5JYF5_PICGL; R2R3-MYB transcription factor MYB11
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G15310.12e-85myb domain protein 16