PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PSME_00049294-RA
Organism
Pseudotsuga menziesii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Pseudotsuga
Family HSF
Protein Properties Length: 358aa    MW: 40966.7 Da    PI: 9.883
Description HSF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PSME_00049294-RAgenomePRSView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HSF_DNA-bind103.71.6e-321502412102
                       HHHHHHHHHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEEESXXXXXXXXXX CS
      HSF_DNA-bind   2 FlkklyeiledeelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiweFkhksFkkgkkell 94 
                       Fl k+y++++d+++++++sw +++n+fvv+ ++e+a +vLp+yF hsnf+SFvRQLn+YgF+k+ + +          eF +  Fkkg+k+ll
  PSME_00049294-RA 150 FLVKTYRLVDDPSTDHIVSWGKHNNTFVVWRPRELAASVLPRYFNHSNFSSFVRQLNTYGFRKIVRGR---------CEFGNGLFKKGQKHLL 233
                       9***************************************************************9988.........67************** PP

                       XXXXXXXX CS
      HSF_DNA-bind  95 ekikrkks 102
                       ++i+r+k 
  PSME_00049294-RA 234 SHIQRRKP 241
                       *****986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004152.0E-50146239IPR000232Heat shock factor (HSF)-type, DNA-binding
SuperFamilySSF467854.29E-32148239IPR011991Winged helix-turn-helix DNA-binding domain
Gene3DG3DSA:1.10.10.103.9E-35148239IPR011991Winged helix-turn-helix DNA-binding domain
PRINTSPR000561.9E-18150173IPR000232Heat shock factor (HSF)-type, DNA-binding
PfamPF004476.8E-29150239IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000561.9E-18188200IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000561.9E-18201213IPR000232Heat shock factor (HSF)-type, DNA-binding
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 358 aa     Download sequence    Send to blast
MTDPAAPQTE PCLVRHRQRN PMGRRNPQWA QKDSEQCALL LKKDMRTPIE SDKLNSLMGG  60
GTGGVFRDEG RLVSSPFRVN TYRLVDDPST SFPRESITIP SWYRAPESSL RLSCHKNLRT  120
PIESDILKAL MGEGTGEVVR DERRLVASPF LVKTYRLVDD PSTDHIVSWG KHNNTFVVWR  180
PRELAASVLP RYFNHSNFSS FVRQLNTYGF RKIVRGRCEF GNGLFKKGQK HLLSHIQRRK  240
PSISSQTMEL AWQMEYDQSL NPNSSSAVQD SDVPAAASCL FEEHEILKRN NLLLLSEIDR  300
LQNICVRDFK LFTRHNTRDP PLIDMHRKMD KVSSNVSMTD VSEEISMSPP KLFGVPLR
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2ldu_A3e-2115024420125Heat shock factor protein 1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G46264.19e-45heat shock transcription factor B4