PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PSME_00049282-RA
Organism
Pseudotsuga menziesii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Pseudotsuga
Family MYB
Protein Properties Length: 332aa    MW: 37450.4 Da    PI: 9.2613
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PSME_00049282-RAgenomePRSView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding521.7e-1686133148
                       TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
   Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 
                       rg+WT++Ed++l + ++ +G g+W+++++  g++R++k+c+ rw +yl
  PSME_00049282-RA  86 RGPWTQDEDLRLTEFIRAHGEGSWSAVPKQAGLKRCGKSCRFRWVNYL 133
                       89********************************************97 PP
2Myb_DNA-binding507.1e-16139182146
                       TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
   Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 
                       rg+ ++eE++l+++++k+lG++ W++Ia +++ gRt++ +k++w++
  PSME_00049282-RA 139 RGNISPEEEDLIIRLHKLLGNR-WSLIAGRIP-GRTDNKVKNYWNT 182
                       7899******************.*********.***********97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129416.18381133IPR017930Myb domain
SuperFamilySSF466891.42E-2884180IPR009057Homeodomain-like
SMARTSM007174.3E-1385135IPR001005SANT/Myb domain
PfamPF002492.5E-1586133IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.601.7E-2187140IPR009057Homeodomain-like
CDDcd001673.71E-988133No hitNo description
PROSITE profilePS5129424.357134188IPR017930Myb domain
SMARTSM007174.5E-15138186IPR001005SANT/Myb domain
PfamPF002492.5E-14139182IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.601.0E-23141187IPR009057Homeodomain-like
CDDcd001671.01E-10143184No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0010026Biological Processtrichome differentiation
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 332 aa     Download sequence    Send to blast
HARGCIRLKS IKPRKPNISE PAVSLKTPTS ANQEGEKEKV ICCPVIEDLK NGATSSNSDV  60
YQRTPGYNLN TMGRKPSYDS NDGLNRGPWT QDEDLRLTEF IRAHGEGSWS AVPKQAGLKR  120
CGKSCRFRWV NYLRPSVKRG NISPEEEDLI IRLHKLLGNR WSLIAGRIPG RTDNKVKNYW  180
NTRLNKKGHA RRCIRLKSIK PRKPNISEPV VSLKTPTSAN QEGEKEKVIC CPVIEDLKNG  240
ATSFNYPRKP EASSSSDPGK LAAVSGEMDL WNSFQLNLNS VPPWACCAFL HDDFKSDFVP  300
ELLDYNQENV HPLSCRFDTE NVISKDYVDE QI
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1h8a_C2e-278118722127MYB TRANSFORMING PROTEIN
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G52600.13e-54myb domain protein 82