PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PSME_00049184-RA

Organism

Pseudotsuga menziesii

Taxonomic ID

3357

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Pseudotsuga

Family

LBD

Protein Properties

Length: 312aa MW: 35151 Da PI: 6.1006

Description

LBD family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PSME_00049184-RA	genome	PRS	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF260	120.8	7.6e-38	4	102	1	99
DUF260 1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkae 93 aCaaCk++++kC+++C lapyfp+++p+kf +h+lFG +v+++l++lp e+r a+ss+vyeAear+ dPv+G+ g+i++l+++leq++++ PSME_00049184-RA 4 ACAACKFQKKKCSEKCLLAPYFPHNDPNKFLLLHRLFGHGHVVRILQDLPSEQRAGALSSMVYEAEARVADPVHGCQGIINALHKKLEQVQEQ 96 7******************************************************************************************** PP DUF260 94 lallke 99 la +++ PSME_00049184-RA 97 LACAEA 102 *98876 PP
2	DUF260	124.5	5.2e-39	156	254	1	99
DUF260 1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkae 93 aCaaCk++++kC+++C lapyfp+++p+kf +h+lFG +v+++l++lp+e+r +a+ss+vyeAear+ dPv+G+ g+i++l+++leq++a+ PSME_00049184-RA 156 ACAACKFQKKKCSEKCLLAPYFPQNDPNKFLLLHRLFGHGHVVRILQDLPTEKRAAAVSSMVYEAEARVADPVHGCQGIINALHKKLEQVQAQ 248 7******************************************************************************************** PP DUF260 94 lallke 99 la++++ PSME_00049184-RA 249 LASVEA 254 *99876 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50891	24.585	3	104	IPR004883	Lateral organ boundaries, LOB
Pfam	PF03195	3.6E-36	4	101	IPR004883	Lateral organ boundaries, LOB
PROSITE profile	PS50891	24.547	155	256	IPR004883	Lateral organ boundaries, LOB
Pfam	PF03195	3.2E-37	156	253	IPR004883	Lateral organ boundaries, LOB

Sequence ? help Back to Top
Protein Sequence Length: 312 aa Download sequence Send to blast
MSQACAACKF QKKKCSEKCL LAPYFPHNDP NKFLLLHRLF GHGHVVRILQ DLPSEQRAGA 60 LSSMVYEAEA RVADPVHGCQ GIINALHKKL EQVQEQLACA EATLGNMSAQ HSNFLINLIN 120 TETYHEDWDP NFDSTLLEER QYTNPTVLEE EIMSQACAAC KFQKKKCSEK CLLAPYFPQN 180 DPNKFLLLHR LFGHGHVVRI LQDLPTEKRA AAVSSMVYEA EARVADPVHG CQGIINALHK 240 KLEQVQAQLA SVEATLGNMS AQHSNFLINL INTETYHEDW DPNFDSTLLQ VRQSTNPTVL 300 DVEVDSLPLW DY

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5ly0_A	2e-28	5	249	12	111	LOB family transfactor Ramosa2.1
5ly0_B	2e-28	5	249	12	111	LOB family transfactor Ramosa2.1
Search in ModeBase

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G07900.1	5e-28	LOB domain-containing protein 1