PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PSME_00049095-RA

Organism

Pseudotsuga menziesii

Taxonomic ID

3357

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Pseudotsuga

Family

bHLH

Protein Properties

Length: 296aa MW: 33301.2 Da PI: 7.2049

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PSME_00049095-RA	genome	PRS	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	37.2	5.1e-12	90	144	1	55
CHHHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-.STCHHHHHHHHHHHHHHH CS HLH 1 rrrahnerErrRRdriNsafeeLrellPkaskapskK.lsKaeiLekAveYIksLq 55 ++ +hn+ Er+RR+++N +++L llP++s ++ kK + +i+ A +YI++L+ PSME_00049095-RA 90 KKLSHNAKERQRRKKLNALYAKLHCLLPHSS-TNMKKqINNPAIVCGALNYISQLR 144 6789***********************74.566666**************95 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
CDD	cd00083	5.98E-9	89	148	No hit	No description
PROSITE profile	PS50888	12.493	89	143	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Gene3D	G3DSA:4.10.280.10	5.9E-11	89	147	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamily	SSF47459	5.23E-12	89	159	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Pfam	PF00010	2.7E-9	90	143	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SMART	SM00353	4.7E-4	95	149	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 296 aa Download sequence Send to blast
MATFETCNYT RESMDKSALP PTESLESQVR IEGSDYWEKA LGFPEFPSSL LQDAAQFLPS 60 ADNVDCNLYH FKKIAEKGSD SNKLDDIASK KLSHNAKERQ RRKKLNALYA KLHCLLPHSS 120 TNMKKQINNP AIVCGALNYI SQLREEIRTL SRQRDEMLTL RRISQHALKA VPAVHSCQML 180 INEIDISKFP SAIWTDVSIS GAGPELLVTV QTAQAAPVFL STVFLLFEEE NLDVVNASTF 240 VYDEKSSHSI QVKPMVFGWR VDTSTLRLKI LSLCEQSRVI LVQHGSPLNI EQGFML

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G04150.1	2e-14	bHLH family protein