PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PSME_00049085-RA
Organism
Pseudotsuga menziesii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Pseudotsuga
Family SRS
Protein Properties Length: 570aa    MW: 59111.3 Da    PI: 8.5501
Description SRS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PSME_00049085-RAgenomePRSView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF702201.13.2e-623655244153
            DUF702   4 gtasCqdCGnqakkdCaheRCRtCCksrgfdCathvkstWvpaakrrerqqqlaaasskaaasaaeaaskrkrelkskkqsalsstklssaes 96 
                       ++++CqdCGnqakkdC h RCRtCCksrgfdC+th+kstWvpaakrre+qq++aaa +   a + + ++kr r  +s++++++s+t++s +++
  PSME_00049085-RA 365 NSTTCQDCGNQAKKDCRHLRCRTCCKSRGFDCSTHLKSTWVPAAKRREKQQAEAAAIA---AGHPRPKTKRARFVSSSNATTTSHTSTSATTP 454
                       5789*********************************************999888744...345677888999999999999*********** PP

            DUF702  97 kkeletss.............lPeevsseavfrcvrvssvddgeeelaYqtavsigGhvfkGiLydqGle 153
                       +++++++s             lP+e++++avf+cvrv++++dg +e+aYq++v+igGh+f+G+Lydq ++
  PSME_00049085-RA 455 PRSSDINStqiahqdlnfkasLPAEIKAQAVFKCVRVTAIEDGVDEFAYQATVKIGGHIFRGVLYDQRVD 524
                       *999999999********************************************************9876 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF051425.7E-57366524IPR007818Protein of unknown function DUF702
TIGRFAMsTIGR016235.9E-26368410IPR006510Zinc finger, lateral root primordium type 1
TIGRFAMsTIGR016241.9E-25476521IPR006511Lateral Root Primordium type 1, C-terminal
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009733Biological Processresponse to auxin
GO:0048364Biological Processroot development
GO:0042803Molecular Functionprotein homodimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 570 aa     Download sequence    Send to blast
MQISRAQMQR NGDVISAILE LGLFRNEAAN ERTSCYGPEE VVVATVAPAV ASSGGASGGP  60
RRTEGGIPEW VSSSSSSSLQ LQPRGVIKER DFSLGFNGGG GAGGGVTHSA GSTSTSHTNH  120
HPRYTLVRPL SYGYPSGIEM AVGGMLGAGV GDSAAGGSGP YAGGPARLGS VGGGSGGINI  180
VNRESLRDVV TRAGGGGGGG GGGGGGGGTE DFVNLYTRVR REDDPTSAPR GGGSFVSYAT  240
APRRVDDPDH QANIQPSMPV LSSAHHGADE RRVDQGEIQL WQQARDLRVD GNQESKEKAM  300
ASQMRVMEIS SGQQASERRN SCELGATGDQ SQLSNVENKN GGGLAVTVAA MPKTNTNPNT  360
ITNTNSTTCQ DCGNQAKKDC RHLRCRTCCK SRGFDCSTHL KSTWVPAAKR REKQQAEAAA  420
IAAGHPRPKT KRARFVSSSN ATTTSHTSTS ATTPPRSSDI NSTQIAHQDL NFKASLPAEI  480
KAQAVFKCVR VTAIEDGVDE FAYQATVKIG GHIFRGVLYD QRVDTANLHS NLPDLHLGGS  540
TTVASTSAMI DPTAGAGVYG VSSSNILGGM
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT1170060.0BT117006.1 Picea glauca clone GQ03811_A07 mRNA sequence.
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G12330.27e-43Lateral root primordium (LRP) protein-related