PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PSME_00048986-RA
Organism
Pseudotsuga menziesii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Pseudotsuga
Family RAV
Protein Properties Length: 799aa    MW: 90513.2 Da    PI: 7.1959
Description RAV family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PSME_00048986-RAgenomePRSView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP242.41.7e-13261309155
               AP2   1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                       s++kGV     +grW A+I++      ++r++lg+f  +eeAa+a+++a++k++g
  PSME_00048986-RA 261 SQFKGVV-PQHNGRWGAQIYEK-----HQRIWLGTFNKEEEAARAYDRAALKFRG 309
                       6899997.5559*********3.....5*************************98 PP
2B390.21.6e-28417511190
                       EEEE-..-HHHHTT-EE--HHH.HTT......---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SS CS
                B3   1 ffkvltpsdvlksgrlvlpkkfaeeh......ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgr 87 
                       f+k+ tpsdv++++rlv+pk +ae++      +    ++  l +ed +g++W+++++y+k+s++yvltkGW++Fvk ++L++gD+v F++ + 
  PSME_00048986-RA 417 FEKIVTPSDVGNLNRLVIPKLHAEKYfpldvnS--RDKGLLLDFEDNTGKVWQFRYSYWKSSQSYVLTKGWSRFVKNKKLEAGDIVSFHRGSA 507
                       99**************************99543..457789************************************************6644 PP

                       .SEE CS
                B3  88 .sef 90 
                        ++ 
  PSME_00048986-RA 508 dDRC 511
                       3444 PP
3AP235.13.4e-11721769155
               AP2   1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                       s++kGV     +grW A+I++      ++r++lg+f  +e+Aaka+++a +k++g
  PSME_00048986-RA 721 SQFKGVV-PQHNGRWGAQIYEK-----HQRVWLGTFNREEDAAKAYDRATLKFRG 769
                       6899997.5559*********3.....5**********************99998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000181.02E-24261316No hitNo description
SuperFamilySSF541717.19E-17261316IPR016177DNA-binding domain
PfamPF008475.3E-8262309IPR001471AP2/ERF domain
SMARTSM003801.7E-26262323IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.102.0E-20262316IPR001471AP2/ERF domain
PROSITE profilePS5103218.979262317IPR001471AP2/ERF domain
Gene3DG3DSA:2.40.330.101.3E-37413511IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019361.44E-27415508IPR015300DNA-binding pseudobarrel domain
CDDcd100177.95E-26415504No hitNo description
PfamPF023625.2E-26417515IPR003340B3 DNA binding domain
SMARTSM010191.0E-20417521IPR003340B3 DNA binding domain
PROSITE profilePS5086313.958417521IPR003340B3 DNA binding domain
CDDcd000181.27E-20721775No hitNo description
SuperFamilySSF541711.37E-14721776IPR016177DNA-binding domain
PfamPF008476.8E-6722769IPR001471AP2/ERF domain
SMARTSM003802.8E-23722783IPR001471AP2/ERF domain
PROSITE profilePS5103217.688722777IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.104.4E-18722776IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 799 aa     Download sequence    Send to blast
MNRFVIRARG DCVLNSKTRL ATEGNVLIVK LLFQLSTYHF RNAFENISTQ ILAEVVHCLS  60
VVSEELSEQE MDNGQTEEGF KGTLLMSTIP TKDRGKMSVA TTTLWQSEIH SPNVVLSLAC  120
CPMNMEMSSS ICGKKNAPVS TPAGHDLDDQ YQSYAYEARE QTRNGEYSTE HKQDGDVGSA  180
MTEEFTFSDI GVSHNGRQPK REAILFKEWP WQKSGQKNHR DMERMEKVMR VVYGSGREFD  240
GCENQRRYLR WMEQARKLPS SQFKGVVPQH NGRWGAQIYE KHQRIWLGTF NKEEEAARAY  300
DRAALKFRGQ EAMINFCPAG DRDPEARFMR EHNKEEIVNM IRKHTYDDEF QCHRNRIVIT  360
VAPSSAMNKA EASGSESEGS GQAGPHVQET LAAVEGHGNA ATSAAAMAAD LLREHLFEKI  420
VTPSDVGNLN RLVIPKLHAE KYFPLDVNSR DKGLLLDFED NTGKVWQFRY SYWKSSQSYV  480
LTKGWSRFVK NKKLEAGDIV SFHRGSADDR CQLYISWRCM SFRHLRFGDG PESRHSRGAQ  540
HSAGSLMYRQ NILNPLKSGA PDSVSSDAPW MPIFWSSSSN SDSFTHSKSD SVYPLVKRVD  600
GYVDAERSQS SLTINGTFPS YFSQPPTKET DERSFYEINQ EGLQAVDLTL DLHSSLSSGD  660
EDTNIKSLQP FVNRARLSAT QEHQAASTVD PATKKAIRLF GVTLAEHRIS SMEQARKLPS  720
SQFKGVVPQH NGRWGAQIYE KHQRVWLGTF NREEDAAKAY DRATLKFRGQ EAMINLCPAR  780
DDDPEAQFIR DHNKEELST
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5os9_A1e-464135184111B3 domain-containing transcription factor NGA1
5os9_B1e-464135184111B3 domain-containing transcription factor NGA1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G25560.13e-78RAV family protein