PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | PSME_00048927-RA | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Pseudotsuga
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Family | LBD | ||||||||
Protein Properties | Length: 172aa MW: 19176.9 Da PI: 6.5025 | ||||||||
Description | LBD family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | DUF260 | 126.4 | 1.4e-39 | 17 | 114 | 1 | 98 |
DUF260 1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkae 93 aCa+Ck++r+kC ++Cv+apyfp+e++ kf vh++FG +nv+kll++l+ e+r +a++s+vyeA+ r+rdPv+G++g+i++l++++e+l+++ PSME_00048927-RA 17 ACAVCKMQRKKCGENCVVAPYFPQEDHDKFLLVHRVFGKANVIKLLQDLSVEQRGEAVKSIVYEAQERVRDPVHGCFGIINDLHKKVEELQSK 109 7******************************************************************************************** PP DUF260 94 lallk 98 la+++ PSME_00048927-RA 110 LAAAE 114 *9886 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50891 | 25.123 | 16 | 117 | IPR004883 | Lateral organ boundaries, LOB |
Pfam | PF03195 | 2.2E-38 | 17 | 114 | IPR004883 | Lateral organ boundaries, LOB |
SuperFamily | SSF140570 | 8.76E-6 | 59 | 139 | IPR033440 | Chromosome partition protein MukF, middle domain |
Sequence ? help Back to Top |
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Protein Sequence Length: 172 aa Download sequence Send to blast |
ISRGVVLQMN NTLPTAACAV CKMQRKKCGE NCVVAPYFPQ EDHDKFLLVH RVFGKANVIK 60 LLQDLSVEQR GEAVKSIVYE AQERVRDPVH GCFGIINDLH KKVEELQSKL AAAEAGLAAN 120 MQSVQHAILI SASLNYHEAS GAAHEFNNAS LHDLDYDVDP LQPWEPLWTF KQ |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5ly0_A | 2e-31 | 16 | 117 | 10 | 111 | LOB family transfactor Ramosa2.1 |
5ly0_B | 2e-31 | 16 | 117 | 10 | 111 | LOB family transfactor Ramosa2.1 |
Search in ModeBase |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
TrEMBL | B8LQI9 | 6e-53 | B8LQI9_PICSI; Uncharacterized protein |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G07900.1 | 4e-38 | LOB domain-containing protein 1 |