PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PSME_00048910-RA

Organism

Pseudotsuga menziesii

Taxonomic ID

3357

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Pseudotsuga

Family

NAC

Protein Properties

Length: 115aa MW: 12812.6 Da PI: 10.7162

Description

NAC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PSME_00048910-RA	genome	PRS	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NAM	77.9	2.3e-24	2	74	59	128
NAM 59 yfFskrdkkyatgkrknratksgyWkatgkdkevlsk...kgelvglkktLvfykgrapkgektdWvmheyrl 128 fF ++ +++++g r+nr +ksgyWkatg+dk++l++ ++++vg+kk vfy gr pkg kt+W+mheyrl PSME_00048910-RA 2 VFFQPKGQENPNGARPNRDAKSGYWKATGTDKPILTStsgGTQKVGVKKAPVFYGGRPPKGIKTNWIMHEYRL 74 59*******************************998888899*************************98 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51005	33.406	1	104	IPR003441	NAC domain
SuperFamily	SSF101941	1.09E-28	3	105	IPR003441	NAC domain
Pfam	PF02365	6.4E-11	3	74	IPR003441	NAC domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 115 aa Download sequence Send to blast
MVFFQPKGQE NPNGARPNRD AKSGYWKATG TDKPILTSTS GGTQKVGVKK APVFYGGRPP 60 KGIKTNWIMH EYRLAYSGDR PSSFPNKKGS LRLDDWVLCQ IYKKNGHSQR VQGAE

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1ut4_A	1e-35	3	110	75	171	NO APICAL MERISTEM PROTEIN
1ut4_B	1e-35	3	110	75	171	NO APICAL MERISTEM PROTEIN
1ut7_A	1e-35	3	110	75	171	NO APICAL MERISTEM PROTEIN
1ut7_B	1e-35	3	110	75	171	NO APICAL MERISTEM PROTEIN
3swm_A	1e-35	3	110	78	174	NAC domain-containing protein 19
3swm_B	1e-35	3	110	78	174	NAC domain-containing protein 19
3swm_C	1e-35	3	110	78	174	NAC domain-containing protein 19
3swm_D	1e-35	3	110	78	174	NAC domain-containing protein 19
3swp_A	1e-35	3	110	78	174	NAC domain-containing protein 19
3swp_B	1e-35	3	110	78	174	NAC domain-containing protein 19
3swp_C	1e-35	3	110	78	174	NAC domain-containing protein 19
3swp_D	1e-35	3	110	78	174	NAC domain-containing protein 19
4dul_A	1e-35	3	110	75	171	NAC domain-containing protein 19
4dul_B	1e-35	3	110	75	171	NAC domain-containing protein 19
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor of the NAC family (Probable). Together with NAC018/NARS2, regulates embryogenesis by regulating the development and degeneration of ovule integuments, a process required for intertissue communication between the embryo and the maternal integument (PubMed:18849494). {ECO:0000269\|PubMed:18849494, ECO:0000305}.

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: By Jasmonic acid (JA). {ECO:0000269\|PubMed:16805732}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_006841705.1	9e-48	NAC transcription factor 56
Refseq	XP_017257164.1	9e-48	PREDICTED: NAC transcription factor 25-like
Swissprot	Q9LD44	2e-43	NAC56_ARATH; NAC transcription factor 56
TrEMBL	A0A482ERL1	3e-47	A0A482ERL1_9SPER; NAC3 domain protein
STRING	ERN03380	3e-47	(Amborella trichopoda)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G15510.1	9e-46	NAC domain containing protein 2

Publications ? help Back to Top
Duarte JM, et al. Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis. Mol. Biol. Evol., 2006. 23(2): p. 469-78 [PMID:16280546]