PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | PSME_00048849-RA | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Pseudotsuga
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Family | LBD | ||||||||
Protein Properties | Length: 237aa MW: 26428.9 Da PI: 5.8198 | ||||||||
Description | LBD family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | DUF260 | 68.8 | 1.2e-21 | 5 | 80 | 15 | 89 |
DUF260 15 dCvlapyfpaeq.pkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleq 89 dCv+apyf++++ + +fa+vhk+FGasnv+k+l +lp +r +a+ ++ yeA+ar++dPv + + + +q ql++ PSME_00048849-RA 5 DCVFAPYFCSDEgATHFAIVHKIFGASNVSKILLHLPMPDRCEAVVTISYEAHARLQDPVASLQAELAFVQAQLAS 80 8*********9989***********************************************999999999988875 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50891 | 12.62 | 1 | 92 | IPR004883 | Lateral organ boundaries, LOB |
Pfam | PF03195 | 3.8E-18 | 5 | 79 | IPR004883 | Lateral organ boundaries, LOB |
Sequence ? help Back to Top |
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Protein Sequence Length: 237 aa Download sequence Send to blast |
MNMLDCVFAP YFCSDEGATH FAIVHKIFGA SNVSKILLHL PMPDRCEAVV TISYEAHARL 60 QDPVASLQAE LAFVQAQLAS RVSSGSASIS ANHPVISSSS YSQHLQFPAH LSLPCQPIPQ 120 PYNALLSRVK EENSCGFATY MDCDFSVSPS DSSPPLMEVL QRCRSLEENE GEDNGELQAL 180 AHALLRRDVP NLAYLNNFNR PPLPDKYFRR YIWNFFLSQM ATKRAKMTTN LEEDNLG |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5ly0_A | 8e-14 | 5 | 78 | 25 | 97 | LOB family transfactor Ramosa2.1 |
5ly0_B | 8e-14 | 5 | 78 | 25 | 97 | LOB family transfactor Ramosa2.1 |
Search in ModeBase |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_024390481.1 | 1e-33 | uncharacterized protein LOC112289471 | ||||
TrEMBL | D5A9D3 | 8e-79 | D5A9D3_PICSI; Uncharacterized protein | ||||
STRING | PP1S261_2V6.1 | 9e-34 | (Physcomitrella patens) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G58190.1 | 3e-29 | lateral organ boundaries-domain 29 |