PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PSME_00048798-RA
Organism
Pseudotsuga menziesii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Pseudotsuga
Family NAC
Protein Properties Length: 279aa    MW: 31220.9 Da    PI: 6.3143
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PSME_00048798-RAgenomePRSView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM170.45.6e-53161451128
               NAM   1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevl 93 
                       lppGfrFhPtdeelvv+yLkkk+++++l++ ++i+e+d+yk++Pw+Lp k++ +e+ewyfFs+rd ky++g r+nra++sgyWkatg+dk++l
  PSME_00048798-RA  16 LPPGFRFHPTDEELVVHYLKKKASSTPLPV-TIIAEIDLYKFDPWELPGKATFGEQEWYFFSPRDMKYPNGARPNRAATSGYWKATGTDKPIL 107
                       79****************************.89***************8888999*************************************9 PP

               NAM  94 sk...kgelvglkktLvfykgrapkgektdWvmheyrl 128
                        +   ++++vg+kk Lvfy gr pkg kt+W+mheyrl
  PSME_00048798-RA 108 IStsgGTQKVGVKKALVFYGGRPPKGIKTNWIMHEYRL 145
                       998888899***************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019413.79E-6410176IPR003441NAC domain
PROSITE profilePS5100561.06116175IPR003441NAC domain
PfamPF023653.9E-2817145IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 279 aa     Download sequence    Send to blast
MESPASFSGS HQQPQLPPGF RFHPTDEELV VHYLKKKASS TPLPVTIIAE IDLYKFDPWE  60
LPGKATFGEQ EWYFFSPRDM KYPNGARPNR AATSGYWKAT GTDKPILIST SGGTQKVGVK  120
KALVFYGGRP PKGIKTNWIM HEYRLADSGA RPSSFPNKKG SLRLDDWVLC RIYKKNGHSQ  180
RVQGAERDES PSADEVMTSL PNIEQQNKLQ LPKLGPFSGL LETDDPFIEG LLNDEAMDGN  240
GNISRLPHQV HSSDLSHNNF SNNNDNNSDC QFEVDDIEI
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3swm_A7e-761318117174NAC domain-containing protein 19
3swm_B7e-761318117174NAC domain-containing protein 19
3swm_C7e-761318117174NAC domain-containing protein 19
3swm_D7e-761318117174NAC domain-containing protein 19
3swp_A7e-761318117174NAC domain-containing protein 19
3swp_B7e-761318117174NAC domain-containing protein 19
3swp_C7e-761318117174NAC domain-containing protein 19
3swp_D7e-761318117174NAC domain-containing protein 19
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor of the NAC family associated with male fertility. {ECO:0000250}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00058PBMTransfer from AT1G61110Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT1111671e-79BT111167.1 Picea glauca clone GQ03233_M04 mRNA sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006841705.11e-117NAC transcription factor 56
SwissprotA2YMR04e-93NAC10_ORYSI; NAC transcription factor ONAC010
TrEMBLW1P8R51e-116W1P8R5_AMBTC; Uncharacterized protein
STRINGERN033801e-116(Amborella trichopoda)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G61110.12e-94NAC domain containing protein 25