PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | PSME_00048626-RA | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Pseudotsuga
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Family | LBD | ||||||||
Protein Properties | Length: 202aa MW: 22768.1 Da PI: 7.7671 | ||||||||
Description | LBD family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | DUF260 | 133.1 | 1.1e-41 | 44 | 143 | 1 | 100 |
DUF260 1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkae 93 aCaaCk++r+kC+++Cvlapyfp+++p+kf +h+lFG+ +v+kll++lp ++r da+sslvyeA+ar+ dPv+G++gvi++lq++le+++++ PSME_00048626-RA 44 ACAACKFHRKKCSEKCVLAPYFPHNDPNKFLLLHRLFGTGHVVKLLQELPAKQRGDAVSSLVYEAKARVADPVHGCAGVINNLQKKLEEVQSQ 136 7******************************************************************************************** PP DUF260 94 lallkee 100 la+++++ PSME_00048626-RA 137 LASAQAK 143 **99987 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50891 | 25.237 | 43 | 144 | IPR004883 | Lateral organ boundaries, LOB |
Pfam | PF03195 | 1.1E-39 | 44 | 141 | IPR004883 | Lateral organ boundaries, LOB |
Sequence ? help Back to Top |
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Protein Sequence Length: 202 aa Download sequence Send to blast |
MNSLYHNKTK LCLLHPCNAE ENTQQLLCAI VLKIMSKVSR EETACAACKF HRKKCSEKCV 60 LAPYFPHNDP NKFLLLHRLF GTGHVVKLLQ ELPAKQRGDA VSSLVYEAKA RVADPVHGCA 120 GVINNLQKKL EEVQSQLASA QAKLYNMSAP QSNFIINLIN SWDHQGWDPN FESTLLQENQ 180 VRQSTNPTVL DVEVDSLPPW DY |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5ly0_A | 3e-34 | 45 | 148 | 12 | 115 | LOB family transfactor Ramosa2.1 |
5ly0_B | 3e-34 | 45 | 148 | 12 | 115 | LOB family transfactor Ramosa2.1 |
Search in ModeBase |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_004240601.1 | 1e-45 | LOB domain-containing protein 1-like | ||||
Refseq | XP_015078864.1 | 1e-45 | LOB domain-containing protein 1-like | ||||
Refseq | XP_017246117.1 | 2e-45 | PREDICTED: LOB domain-containing protein 1-like | ||||
Swissprot | Q9LQR0 | 1e-45 | LBD1_ARATH; LOB domain-containing protein 1 | ||||
TrEMBL | B8LQI9 | 6e-52 | B8LQI9_PICSI; Uncharacterized protein | ||||
STRING | Solyc06g005090.2.1 | 5e-45 | (Solanum lycopersicum) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G07900.1 | 5e-48 | LOB domain-containing protein 1 |