PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PSME_00048424-RA
Organism
Pseudotsuga menziesii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Pseudotsuga
Family NAC
Protein Properties Length: 375aa    MW: 43271.9 Da    PI: 7.1021
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PSME_00048424-RAgenomePRSView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM177.53.7e-5561331128
               NAM   1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLp.kkvkaeek.ewyfFskrdkkyatgkrknratksgyWkatgkdke 91 
                       lppGfrFhPtdeelv +yLk k++g k e+ e+i+evdiyk+ePwdLp k++ a+++ ewyfFs+rd+ky++++r+nratk+gyWkatgkd++
  PSME_00048424-RA   6 LPPGFRFHPTDEELVAYYLKGKIHGWKREI-EIIHEVDIYKCEPWDLPeKSLLAGRHlEWYFFSRRDRKYPKSSRTNRATKAGYWKATGKDRK 97 
                       79*************************999.89***************5444444345*********************************** PP

               NAM  92 vlskkgelvglkktLvfykgrapkgektdWvmheyrl 128
                       v+s + + +g+kktLvfy grap+g++tdW+mheyrl
  PSME_00048424-RA  98 VIS-NMRSIGMKKTLVFYMGRAPHGSRTDWIMHEYRL 133
                       ***.9999***************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019411.7E-593140IPR003441NAC domain
PROSITE profilePS5100554.4356157IPR003441NAC domain
PfamPF023657.9E-297133IPR003441NAC domain
Gene3DG3DSA:1.20.1050.109.0E-7267333IPR010987Glutathione S-transferase, C-terminal-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 375 aa     Download sequence    Send to blast
MAQISLPPGF RFHPTDEELV AYYLKGKIHG WKREIEIIHE VDIYKCEPWD LPEKSLLAGR  60
HLEWYFFSRR DRKYPKSSRT NRATKAGYWK ATGKDRKVIS NMRSIGMKKT LVFYMGRAPH  120
GSRTDWIMHE YRLDKNECES SASFQKSESR PMNIGEQSGA PAKKDFSGSI STLFEKNRIL  180
YMEEQYEEKP SLLSHAEHDQ TNSKETINDI NAEEEALNRP QLLHYDNGSC NLDSANDSTY  240
NRKVPLADFS QDHIVTLFDH PLIDTLHLEA ISLQVVALVG SIIHSHQILA VLNLIEKLGS  300
EEHLGQPQHF IEKDFTVLEK LLKDYAGMVV FGSDDRGSIN QWSRKISKAS NDQNKFCYIN  360
LQGETKCRYL RNDVN
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3ulx_A2e-53213311140Stress-induced transcription factor NAC1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G65910.19e-75NAC domain containing protein 28