PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PSME_00048384-RA
Organism
Pseudotsuga menziesii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Pseudotsuga
Family ERF
Protein Properties Length: 223aa    MW: 25297.4 Da    PI: 4.8718
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PSME_00048384-RAgenomePRSView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP247.93.4e-15753353
               AP2  3 ykGVrwdkkrgrWvAeIrdpsengkr..krfslgkfgtaeeAakaaiaarkkl 53
                      y G r+++ +g+Wv+eIr+p        +r++lg+f tae+Aa+a+++a+  +
  PSME_00048384-RA  7 YGGARQRH-WGSWVSEIRHP-----IlkTRVWLGTFETAEDAARAYDEAAILM 53
                      66778888.**********8.....556*********************9866 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000184.58E-28566No hitNo description
SMARTSM003804.9E-33670IPR001471AP2/ERF domain
SuperFamilySSF541711.37E-16665IPR016177DNA-binding domain
Gene3DG3DSA:3.30.730.101.0E-28664IPR001471AP2/ERF domain
PROSITE profilePS5103219.322664IPR001471AP2/ERF domain
PfamPF008471.1E-8755IPR001471AP2/ERF domain
PRINTSPR003672.5E-9718IPR001471AP2/ERF domain
PRINTSPR003672.5E-92945IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 223 aa     Download sequence    Send to blast
MARPQRYGGA RQRHWGSWVS EIRHPILKTR VWLGTFETAE DAARAYDEAA ILMCGPHHAK  60
TNFTYDPSAP PSSRPSFLSG ALTAKLAALN IEMQEGTANK DHMESPVMTA SLAYLRLDTE  120
KSNLRIWQKR SGKRSESNMG MTVKFGNRSH RDQEPFLKQE ETEDDIALEM IEEQPSLKQE  180
ETEDDIALEM IEEQPSLKQE ETEDGIALEM IEELLHGKNV KIA
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT1107889e-89BT110788.1 Picea glauca clone GQ03227_P10 mRNA sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024393916.15e-54ethylene-responsive transcription factor ERF003-like
TrEMBLA0A2K1JHW11e-52A0A2K1JHW1_PHYPA; Uncharacterized protein
STRINGPP1S79_25V6.16e-53(Physcomitrella patens)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G25190.12e-32ERF family protein