PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PSME_00048330-RA

Organism

Pseudotsuga menziesii

Taxonomic ID

3357

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Pseudotsuga

Family

MYB_related

Protein Properties

Length: 370aa MW: 41337.3 Da PI: 4.2801

Description

MYB_related family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PSME_00048330-RA	genome	PRS	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	42	2.2e-13	10	52	1	45
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwq 45 rg+++ +E+ ++++ lG++ W+ Ia +m+ gRt++++k++w+ PSME_00048330-RA 10 RGAFSCQEERFIIRLQSILGNR-WSQIAGHMP-GRTDNEIKNYWN 52 899999**************.*****.*********8 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:1.10.10.60	8.8E-22	1	59	IPR009057	Homeodomain-like
SuperFamily	SSF46689	2.32E-13	1	60	IPR009057	Homeodomain-like
PROSITE profile	PS51294	22.694	5	59	IPR017930	Myb domain
SMART	SM00717	1.5E-12	9	57	IPR001005	SANT/Myb domain
Pfam	PF00249	1.0E-11	10	53	IPR001005	SANT/Myb domain
CDD	cd00167	1.84E-9	16	52	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 370 aa Download sequence Send to blast
MNYLRPELKR GAFSCQEERF IIRLQSILGN RWSQIAGHMP GRTDNEIKNY WNSSIKKKLL 60 LKNDGLSFSP NSNGSDESNI LPVQADLISN NDTNSVSIYD TFSSSHSGQP FLDIMRPEGY 120 QPANNTFNVV ANGENRLSVN PEVLKLENRQ VQDLNDEIST SDPDTNELIS YFQLWVDATS 180 THQRQTPNET PASGDYSSTV STSMTVPADN FIDSRQSFVK EFDNHGDMLV NENEITIDAS 240 SGLSRWSASY SYSDATDCSH VIYPGAYTPD YDREISIIED YQKTTPQSCA TLNSGSQFCA 300 PAGVTSSAGQ CNDFLAEDDC NDPLKLRYDV SLGISMHDID INTMQRSHSM EEEGLAIDGI 360 YQEFPIKKRT

Sequence ? help Back to Top

Protein Sequence Length: 370 aa Download sequence Send to blast

MNYLRPELKR GAFSCQEERF IIRLQSILGN RWSQIAGHMP GRTDNEIKNY WNSSIKKKLL  60
LKNDGLSFSP NSNGSDESNI LPVQADLISN NDTNSVSIYD TFSSSHSGQP FLDIMRPEGY  120
QPANNTFNVV ANGENRLSVN PEVLKLENRQ VQDLNDEIST SDPDTNELIS YFQLWVDATS  180
THQRQTPNET PASGDYSSTV STSMTVPADN FIDSRQSFVK EFDNHGDMLV NENEITIDAS  240
SGLSRWSASY SYSDATDCSH VIYPGAYTPD YDREISIIED YQKTTPQSCA TLNSGSQFCA  300
PAGVTSSAGQ CNDFLAEDDC NDPLKLRYDV SLGISMHDID INTMQRSHSM EEEGLAIDGI  360
YQEFPIKKRT

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1a5j_A	3e-16	2	59	51	108	B-MYB

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G12870.1	4e-24	myb domain protein 46