PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | PSME_00048314-RA | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Pseudotsuga
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Family | LBD | ||||||||
Protein Properties | Length: 252aa MW: 27955.8 Da PI: 6.8708 | ||||||||
Description | LBD family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | DUF260 | 125 | 3.8e-39 | 91 | 189 | 1 | 99 |
DUF260 1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkae 93 +CaaCk +++kC+++Cvlapyfp+++p+kf vhk+FG+ +v kll++lp e+r +a+sslvyeA+ r+rdPvyG+vg+i++lq++++ l+ + PSME_00048314-RA 91 PCAACKNQKKKCSEKCVLAPYFPQNDPQKFLSVHKVFGNVHVAKLLQELPAEKRGEAVSSLVYEARERLRDPVYGCVGIISDLQNKVALLQFQ 183 7******************************************************************************************** PP DUF260 94 lallke 99 la+++e PSME_00048314-RA 184 LASTEE 189 999876 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50891 | 24.925 | 90 | 191 | IPR004883 | Lateral organ boundaries, LOB |
Pfam | PF03195 | 1.2E-38 | 91 | 188 | IPR004883 | Lateral organ boundaries, LOB |
Sequence ? help Back to Top |
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Protein Sequence Length: 252 aa Download sequence Send to blast |
MTQAGDTDVT QVDRCTVNNK YKLCDCVSTF TKVWQQSSSS LVGLIIWLPS KQYGGAGPRF 60 KSSLAGSCKE VVFADMSNMS AHSKSTETAY PCAACKNQKK KCSEKCVLAP YFPQNDPQKF 120 LSVHKVFGNV HVAKLLQELP AEKRGEAVSS LVYEARERLR DPVYGCVGII SDLQNKVALL 180 QFQLASTEED LARIRLLHAN LLTLDTGYLQ VSDPDFYSGS LQAENKDTST NPPVLDDGDP 240 MQLWEPLWTY TK |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5ly0_A | 4e-35 | 91 | 193 | 11 | 113 | LOB family transfactor Ramosa2.1 |
5ly0_B | 4e-35 | 91 | 193 | 11 | 113 | LOB family transfactor Ramosa2.1 |
Search in ModeBase |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
TrEMBL | B8LQI9 | 9e-72 | B8LQI9_PICSI; Uncharacterized protein |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G07900.1 | 3e-43 | LOB domain-containing protein 1 |