PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | PSME_00048167-RA | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Pseudotsuga
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Family | LBD | ||||||||
Protein Properties | Length: 239aa MW: 26232.3 Da PI: 6.66 | ||||||||
Description | LBD family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | DUF260 | 116.4 | 1.8e-36 | 7 | 104 | 1 | 96 |
DUF260 1 aCaaCkvlrrkCakdCvlapyfpaeq..pkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlk 91 +C aCk+lrrkC+k+Cv+apyf++e+ + +f ++hk+FGasn +kll +lp e+r++a+ s++y Aear++dPvyG+v++i +lqqq+++lk PSME_00048167-RA 7 PCGACKFLRRKCVKGCVFAPYFCSEEmgAPRFGAIHKVFGASNFSKLLMHLPVEHRDNAVVSVLYAAEARLQDPVYGCVSHIYALQQQVANLK 99 7***********************995569**************************************************************9 PP DUF260 92 aelal 96 +la+ PSME_00048167-RA 100 GKLAA 104 99876 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50891 | 21.875 | 6 | 109 | IPR004883 | Lateral organ boundaries, LOB |
Pfam | PF03195 | 6.4E-35 | 7 | 103 | IPR004883 | Lateral organ boundaries, LOB |
Sequence ? help Back to Top |
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Protein Sequence Length: 239 aa Download sequence Send to blast |
MGGGGAPCGA CKFLRRKCVK GCVFAPYFCS EEMGAPRFGA IHKVFGASNF SKLLMHLPVE 60 HRDNAVVSVL YAAEARLQDP VYGCVSHIYA LQQQVANLKG KLAAGYAQLA DCSHSDVSSL 120 SPAHDQYGQQ SEMPSLTSNS NSSSPSPSDK VQYLNTWGVP QQIPSDSVEI NNYCEEARDD 180 KSLWSSYSMC MQGSTHPVST AQETHVFHNG ERFSEQRHLD NNENGDLQDL VLAILRRNR |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5ly0_A | 1e-36 | 3 | 109 | 7 | 111 | LOB family transfactor Ramosa2.1 |
5ly0_B | 1e-36 | 3 | 109 | 7 | 111 | LOB family transfactor Ramosa2.1 |
Search in ModeBase |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
TrEMBL | B9GS34 | 3e-50 | B9GS34_POPTR; Uncharacterized protein | ||||
STRING | POPTR_0002s04200.1 | 5e-51 | (Populus trichocarpa) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G42440.1 | 9e-49 | LBD family protein |