PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PSME_00048069-RA
Organism
Pseudotsuga menziesii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Pseudotsuga
Family SBP
Protein Properties Length: 323aa    MW: 34593.1 Da    PI: 8.4975
Description SBP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PSME_00048069-RAgenomePRSView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SBP35.13.5e-1120455378
                      TT--SS--S-STTTT-------S--- CS
               SBP 53 sefDeekrsCrrrLakhnerrrkkqa 78
                       efDe krsCr+rLa+hn+rrrk+q+
  PSME_00048069-RA 20 AEFDEVKRSCRKRLANHNRRRRKPQT 45
                      79*********************986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5114111.024143IPR004333Transcription factor, SBP-box
SuperFamilySSF1036121.33E-82048IPR004333Transcription factor, SBP-box
PfamPF031103.7E-52042IPR004333Transcription factor, SBP-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 323 aa     Download sequence    Send to blast
MTPPALSQAV SNSVSANSAA EFDEVKRSCR KRLANHNRRR RKPQTNTIVP AVSSAEAATA  60
LKVEDDDNNV LGSCNNTSRG TVQTSVAAAA SPVLRTEAQA LLNAMSLPLI LQNTKGSQMN  120
NNSNTNTNSN SNTTTNNPML QQPNSQKVPV VNQQYVQQQN GGGHKGPNLS LSSPSVGMSL  180
CNQRQTTAQD YSGLELALPR LRTTSDYGGS SHKPPPAMDN ILHPIISHEK ANVEAFSASS  240
VQNFLPLTGS MSSRELGSSQ WMVGSSDSAS SLEAGQQMFS LLEPAEHHNR TEEQAQTARP  300
VEYLSHRHQG GLNSKEPVDG NPK
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
12542KRSCRKRLANHNRRRRKP
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-