PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | PSME_00048048-RA | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Pseudotsuga
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Family | bZIP | ||||||||
Protein Properties | Length: 637aa MW: 70056.1 Da PI: 6.6652 | ||||||||
Description | bZIP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | bZIP_1 | 36.8 | 8.7e-12 | 454 | 513 | 5 | 64 |
CHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC CS bZIP_1 5 krerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkkeleelkkevaklkseve 64 kr +r NR +A rs +RK +i eLe+kv++L++e ++L +l l+ +a l s+++ PSME_00048048-RA 454 KRVKRILANRQSAARSKERKMRYISELERKVQTLQTEATTLSAQLTLLQRDSAGLGSQNH 513 8999************************************************99999986 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00338 | 1.5E-18 | 450 | 514 | IPR004827 | Basic-leucine zipper domain |
PROSITE profile | PS50217 | 10.749 | 452 | 515 | IPR004827 | Basic-leucine zipper domain |
Pfam | PF00170 | 9.5E-10 | 454 | 512 | IPR004827 | Basic-leucine zipper domain |
Gene3D | G3DSA:1.20.5.170 | 1.4E-11 | 454 | 510 | No hit | No description |
SuperFamily | SSF57959 | 5.34E-11 | 454 | 505 | No hit | No description |
CDD | cd14703 | 3.88E-24 | 455 | 506 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0005829 | Cellular Component | cytosol | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 637 aa Download sequence Send to blast |
MEDMDNSYGD LMQRLQSSMG TSSSFIPKQQ LNKSEPSSPA ISQTRPPFTA NIQNFSLGSK 60 RQGIPPSHPH FPPTSPHSQA FFNQMPVLQS PVQQNSQNQQ HSNATHTTLH SRSMSQPPIF 120 NLDSLPPLNP CSYRDPSSPS MSDPVSGDVS MEDQEGSSAL PSLSPHNPPP LFPSGRRSQN 180 QMSDGLPPRK GHRRARSDNP FTFMSGSQSL SGDIQQGFAS SLETSSVKGA AQIDHLNQYV 240 SSLDREKTKA QVVKAELNQE RNGIQNVESM GEGETGREAG EDMVSGCIDV EKMNNLNKPR 300 LASGEMPDNL NGVQEDSGGS SVKQKNLKDG DQFSSSDEAD SEVNEFNIMK RSNSGVGYEE 360 NKSAGQGDGS QYLNRSRHSR SVSMDSIMSK MHSFSDDLEQ EPSQGRNVRH SHSNSMDGST 420 SFNVEFGNGE FSASEMKKIM ASEKLAELAT VDPKRVKRIL ANRQSAARSK ERKMRYISEL 480 ERKVQTLQTE ATTLSAQLTL LQRDSAGLGS QNHELKLRLQ AMEQQAQLRD ALNEALAEEV 540 QRLKLATGQL GAGQSGSLAQ QMSMNSPLFQ LQQQGPPHPL YQLQQQHQQQ QQQQHQVKYS 600 QQPPGQQTNR NEVRQTTYSS LPGPVGSSSK PDNSNEC |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | BT104878 | 0.0 | BT104878.1 Picea glauca clone GQ02816_C17 mRNA sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_010263926.1 | 1e-140 | PREDICTED: probable serine/threonine-protein kinase mps1 | ||||
TrEMBL | A0A200QQ81 | 1e-140 | A0A200QQ81_9MAGN; Basic-leucine zipper domain |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G38900.3 | 2e-73 | bZIP family protein |