PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | PSME_00048045-RA | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Pseudotsuga
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Family | GATA | ||||||||
Protein Properties | Length: 205aa MW: 22846.3 Da PI: 10.3593 | ||||||||
Description | GATA family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | GATA | 38.8 | 1.3e-12 | 90 | 124 | 1 | 35 |
GATA 1 CsnCgttkTplWRrgpdgnktLCnaCGlyyrkkgl 35 C+ C+t Tpl R+gpdg+k+L naCG+ ++k g+ PSME_00048045-RA 90 CAECKTNRTPLCRNGPDGPKSLYNACGIQFKKIGK 124 ********************************886 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00401 | 2.7E-8 | 84 | 136 | IPR000679 | Zinc finger, GATA-type |
SuperFamily | SSF57716 | 3.94E-7 | 84 | 132 | No hit | No description |
Gene3D | G3DSA:3.30.50.10 | 6.4E-11 | 88 | 125 | IPR013088 | Zinc finger, NHR/GATA-type |
Pfam | PF00320 | 1.3E-10 | 90 | 124 | IPR000679 | Zinc finger, GATA-type |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0008270 | Molecular Function | zinc ion binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 205 aa Download sequence Send to blast |
MEAKFTVLYP SACRCICLMM PRNKPQKSVN IFPLQQEGHE ERKLQENGKK SSAKESLQSL 60 RRFLHIGENR LVKTGEMDAE FLDAAVARTC AECKTNRTPL CRNGPDGPKS LYNACGIQFK 120 KIGKREQQKA GSRLPSVSSV RQMTAKRKQQ DSDEYDPLPR DAAIAATSHP LRKKSTATVT 180 APPTGGHHSS VVLERIQFKR APVVE |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
TrEMBL | A0A0C9QY08 | 5e-21 | A0A0C9QY08_9SPER; TSA: Wollemia nobilis Ref_Wollemi_Transcript_23_1742 transcribed RNA sequence |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G18380.1 | 1e-13 | GATA transcription factor 20 |